Literature DB >> 17444725

Representability problems for coarse-grained water potentials.

Margaret E Johnson1, Teresa Head-Gordon, Ard A Louis.   

Abstract

The use of an effective intermolecular potential often involves a compromise between more accurate, complex functional forms and more tractable simple representations. To study this choice in detail, we systematically derive coarse-grained isotropic pair potentials that accurately reproduce the oxygen-oxygen radial distribution function of the TIP4P-Ew water model at state points over density ranges from 0.88 to 1.30 g/cm3 and temperature ranges from 235 to 310 K. Although by construction these effective potentials correctly represent the isothermal compressibility of TIP4P-Ew water, they do not accurately resolve other thermodynamic properties such as the virial pressure, the internal energy, or thermodynamic anomalies. Because at a given state point the pair potential that reproduces the pair structure is unique, we have therefore explicitly demonstrated that it is impossible to simultaneously represent the pair structure and several key equilibrium thermodynamic properties of water with state-point dependent radially symmetric pair potentials. We argue that such representability problems are related to, but different from, more widely acknowledged transferability problems and discuss in detail the implications this has for the modeling of water and other liquids by coarse-grained potentials. Nevertheless, regardless of thermodynamic inconsistencies, the state-point dependent effective potentials for water do generate structural and dynamical anomalies.

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Year:  2007        PMID: 17444725     DOI: 10.1063/1.2715953

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

1.  Properties of a soft-core model of methanol: an integral equation theory and computer simulation study.

Authors:  Matej Huš; Gianmarco Munaò; Tomaz Urbic
Journal:  J Chem Phys       Date:  2014-10-28       Impact factor: 3.488

2.  Reference state for the generalized Yvon-Born-Green theory: application for coarse-grained model of hydrophobic hydration.

Authors:  J W Mullinax; W G Noid
Journal:  J Chem Phys       Date:  2010-09-28       Impact factor: 3.488

3.  Comparative atomistic and coarse-grained study of water: what do we lose by coarse-graining?

Authors:  Han Wang; Christoph Junghans; Kurt Kremer
Journal:  Eur Phys J E Soft Matter       Date:  2009-01-14       Impact factor: 1.890

4.  The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures.

Authors:  Vinod Krishna; Will G Noid; Gregory A Voth
Journal:  J Chem Phys       Date:  2009-07-14       Impact factor: 3.488

5.  On the investigation of coarse-grained models for water: balancing computational efficiency and the retention of structural properties.

Authors:  Kevin R Hadley; Clare McCabe
Journal:  J Phys Chem B       Date:  2010-04-08       Impact factor: 2.991

6.  Understanding Missing Entropy in Coarse-Grained Systems: Addressing Issues of Representability and Transferability.

Authors:  Jaehyeok Jin; Alexander J Pak; Gregory A Voth
Journal:  J Phys Chem Lett       Date:  2019-07-30       Impact factor: 6.475

7.  Physics-driven coarse-grained model for biomolecular phase separation with near-quantitative accuracy.

Authors:  Jerelle A Joseph; Aleks Reinhardt; Anne Aguirre; Pin Yu Chew; Kieran O Russell; Jorge R Espinosa; Adiran Garaizar; Rosana Collepardo-Guevara
Journal:  Nat Comput Sci       Date:  2021-11-22

Review 8.  Bottom-up Coarse-Graining: Principles and Perspectives.

Authors:  Jaehyeok Jin; Alexander J Pak; Aleksander E P Durumeric; Timothy D Loose; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-07       Impact factor: 6.578

9.  Multiscale coarse-graining of the protein energy landscape.

Authors:  Ronald D Hills; Lanyuan Lu; Gregory A Voth
Journal:  PLoS Comput Biol       Date:  2010-06-24       Impact factor: 4.475

10.  Model reduction of rigid-body molecular dynamics via generalized multipole potentials.

Authors:  Paul N Patrone; Andrew Dienstfrey; G B McFadden
Journal:  Phys Rev E       Date:  2019-12       Impact factor: 2.529

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