Literature DB >> 17438274

Using theory and computation to model nanoscale properties.

George C Schatz1.   

Abstract

This article provides an overview of the use of theory and computation to describe the structural, thermodynamic, mechanical, and optical properties of nanoscale materials. Nanoscience provides important opportunities for theory and computation to lead in the discovery process because the experimental tools often provide an incomplete picture of the structure and/or function of nanomaterials, and theory can often fill in missing features crucial to understanding what is being measured. However, there are important challenges to using theory as well, as the systems of interest are usually too large, and the time scales too long, for a purely atomistic level theory to be useful. At the same time, continuum theories that are appropriate for describing larger-scale (micrometer) phenomena are often not accurate for describing the nanoscale. Despite these challenges, there has been important progress in a number of areas, and there are exciting opportunities that we can look forward to as the capabilities of computational facilities continue to expand. Some specific applications that are discussed in this paper include: self-assembly of supramolecular structures, the thermal properties of nanoscale molecular systems (DNA melting and nanoscale water meniscus formation), the mechanical properties of carbon nanotubes and diamond crystals, and the optical properties of silver and gold nanoparticles.

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Year:  2007        PMID: 17438274      PMCID: PMC1855400          DOI: 10.1073/pnas.0702187104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  A bead and spring model for the stiffness of DNA.

Authors:  J García de la Torre; J J Freire; A Horta
Journal:  Biopolymers       Date:  1975-07       Impact factor: 2.505

2.  Capillary force on a nanoscale tip in dip-pen nanolithography.

Authors:  Joonkyung Jang; George C Schatz; Mark A Ratner
Journal:  Phys Rev Lett       Date:  2003-04-17       Impact factor: 9.161

3.  Capillary force in atomic force microscopy.

Authors:  Joonkyung Jang; George C Schatz; Mark A Ratner
Journal:  J Chem Phys       Date:  2004-01-15       Impact factor: 3.488

4.  Surface and bulk dissolution properties, and selectivity of DNA-linked nanoparticle assemblies.

Authors:  D B Lukatsky; Daan Frenkel
Journal:  J Chem Phys       Date:  2005-06-01       Impact factor: 3.488

5.  Finite lifetime effects on the polarizability within time-dependent density-functional theory.

Authors:  L Jensen; J Autschbach; G C Schatz
Journal:  J Chem Phys       Date:  2005-06-08       Impact factor: 3.488

6.  Statistical mechanics of DNA-mediated colloidal aggregation.

Authors:  Nicholas A Licata; Alexei V Tkachenko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-10-30

7.  Molecular dynamics studies of ion distributions for DNA duplexes and DNA clusters: salt effects and connection to DNA melting.

Authors:  Hai Long; Alexander Kudlay; George C Schatz
Journal:  J Phys Chem B       Date:  2006-02-16       Impact factor: 2.991

8.  Duplex and hairpin dimer structures for perylene diimide-oligonucleotide conjugates.

Authors:  Yan Zheng; Hai Long; George C Schatz; Frederick D Lewis
Journal:  Chem Commun (Camb)       Date:  2005-09-01       Impact factor: 6.222

9.  Time-dependent density functional calculations of optical rotatory dispersion including resonance wavelengths as a potentially useful tool for determining absolute configurations of chiral molecules.

Authors:  Jochen Autschbach; Lasse Jensen; George C Schatz; Y C Electra Tse; Mykhaylo Krykunov
Journal:  J Phys Chem A       Date:  2006-02-23       Impact factor: 2.781

10.  "Dip-Pen" nanolithography

Authors: 
Journal:  Science       Date:  1999-01-29       Impact factor: 47.728

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  6 in total

1.  Profile of George Schatz.

Authors:  Kaspar Mossman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-18       Impact factor: 11.205

Review 2.  X-ray scattering combined with coordinate-based analyses for applications in natural and artificial photosynthesis.

Authors:  David M Tiede; Kristy L Mardis; Xiaobing Zuo
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

3.  Mesoscale molecular network formation in amorphous organic materials.

Authors:  Brett M Savoie; Kevin L Kohlstedt; Nicholas E Jackson; Lin X Chen; Monica Olvera de la Cruz; George C Schatz; Tobin J Marks; Mark A Ratner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

4.  Solution-state conformational ensemble of a hexameric porphyrin array characterized using molecular dynamics and X-ray scattering.

Authors:  Kristy L Mardis; Heather M Sutton; Xiaobing Zuo; Jonathan S Lindsey; David M Tiede
Journal:  J Phys Chem A       Date:  2009-03-19       Impact factor: 2.781

5.  Computational validation of protein nanotubes.

Authors:  Idit Buch; Bernard R Brooks; Haim J Wolfson; Ruth Nussinov
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

6.  Temperature-induced melting of double-stranded DNA in the absence and presence of covalently bonded antitumour drugs: insight from molecular dynamics simulations.

Authors:  Juan A Bueren-Calabuig; Christophe Giraudon; Carlos M Galmarini; Jean Marc Egly; Federico Gago
Journal:  Nucleic Acids Res       Date:  2011-07-03       Impact factor: 16.971

  6 in total

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