Literature DB >> 17436037

Mouse Phenotype Database Integration Consortium: integration [corrected] of mouse phenome data resources.

John M Hancock, Niels C Adams, Vassilis Aidinis, Andrew Blake, Molly Bogue, Steve D M Brown, Elissa J Chesler, Duncan Davidson, Christopher Duran, Janan T Eppig, Valérie Gailus-Durner, Hilary Gates, Georgios V Gkoutos, Simon Greenaway, Martin Hrabé de Angelis, George Kollias, Sophie Leblanc, Kirsty Lee, Christoph Lengger, Holger Maier, Ann-Marie Mallon, Hiroshi Masuya, David G Melvin, Werner Müller, Helen Parkinson, Glenn Proctor, Eli Reuveni, Paul Schofield, Aadya Shukla, Cynthia Smith, Tetsuro Toyoda, Laurent Vasseur, Shigeharu Wakana, Alison Walling, Jacqui White, Joe Wood, Michalis Zouberakis.   

Abstract

Understanding the functions encoded in the mouse genome will be central to an understanding of the genetic basis of human disease. To achieve this it will be essential to be able to characterize the phenotypic consequences of variation and alterations in individual genes. Data on the phenotypes of mouse strains are currently held in a number of different forms (detailed descriptions of mouse lines, first-line phenotyping data on novel mutations, data on the normal features of inbred lines) at many sites worldwide. For the most efficient use of these data sets, we have initiated a process to develop standards for the description of phenotypes (using ontologies) and file formats for the description of phenotyping protocols and phenotype data sets. This process is ongoing and needs to be supported by the wider mouse genetics and phenotyping communities to succeed. We invite interested parties to contact us as we develop this process further.

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Mesh:

Year:  2007        PMID: 17436037      PMCID: PMC4230762          DOI: 10.1007/s00335-007-9004-x

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  17 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  WebQTL: rapid exploratory analysis of gene expression and genetic networks for brain and behavior.

Authors:  Elissa J Chesler; Lu Lu; Jintao Wang; Robert W Williams; Kenneth F Manly
Journal:  Nat Neurosci       Date:  2004-05       Impact factor: 24.884

3.  FIMRe: Federation of International Mouse Resources: global networking of resource centers.

Authors:  Muriel Davisson
Journal:  Mamm Genome       Date:  2006-05       Impact factor: 2.957

4.  Visualizing the laboratory mouse: capturing phenotype information.

Authors:  Mark Strivens; Janan T Eppig
Journal:  Genetica       Date:  2004-09       Impact factor: 1.082

5.  EMPReSS: European mouse phenotyping resource for standardized screens.

Authors:  Eain C J Green; Georgios V Gkoutos; Heena V Lad; Andrew Blake; Joseph Weekes; John M Hancock
Journal:  Bioinformatics       Date:  2005-04-12       Impact factor: 6.937

Review 6.  Large-scale mutagenesis of the mouse to understand the genetic bases of nervous system structure and function.

Authors:  Dan Goldowitz; Wayne N Frankel; Joseph S Takahashi; Martha Holtz-Vitaterna; Carol Bult; Warren A Kibbe; Jay Snoddy; Yanxia Li; Stephanie Pretel; Jeana Yates; Douglas J Swanson
Journal:  Brain Res Mol Brain Res       Date:  2004-12-20

7.  EMPReSS: standardized phenotype screens for functional annotation of the mouse genome.

Authors:  S D M Brown; P Chambon; M Hrabé de Angelis
Journal:  Nat Genet       Date:  2005-11       Impact factor: 38.330

8.  The Mouse Genome Database (MGD): updates and enhancements.

Authors:  Judith A Blake; Janan T Eppig; Carol J Bult; James A Kadin; Joel E Richardson
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  Using ontologies to describe mouse phenotypes.

Authors:  Georgios V Gkoutos; Eain C J Green; Ann-Marie Mallon; John M Hancock; Duncan Davidson
Journal:  Genome Biol       Date:  2004-12-20       Impact factor: 13.583

Review 10.  MuTrack: a genome analysis system for large-scale mutagenesis in the mouse.

Authors:  Erich J Baker; Leslie Galloway; Barbara Jackson; Denise Schmoyer; Jay Snoddy
Journal:  BMC Bioinformatics       Date:  2004-02-03       Impact factor: 3.169

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  24 in total

1.  Phenostat: visualization and statistical tool for analysis of phenotyping data.

Authors:  Eli Reuveni; Valeria Carola; Mumna Al Banchaabouchi; Nadia Rosenthal; John M Hancock; Cornelius Gross
Journal:  Mamm Genome       Date:  2007-08-03       Impact factor: 2.957

2.  From ENU mutagenesis to population genetics.

Authors:  N Avrion Mitchison; Bryan Clarke
Journal:  Mamm Genome       Date:  2008-03-26       Impact factor: 2.957

Review 3.  Mouse models in male fertility research.

Authors:  Duangporn Jamsai; Moira K O'Bryan
Journal:  Asian J Androl       Date:  2010-11-08       Impact factor: 3.285

4.  Where's the mouse info?

Authors:  J P Sundberg; J M Ward; P Schofield
Journal:  Vet Pathol       Date:  2009-07-15       Impact factor: 2.221

5.  A MOD(ern) perspective on literature curation.

Authors:  Jodi Hirschman; Tanya Z Berardini; Harold J Drabkin; Doug Howe
Journal:  Mol Genet Genomics       Date:  2010-03-11       Impact factor: 3.291

6.  SDOP-DB: a comparative standardized-protocol database for mouse phenotypic analyses.

Authors:  Nobuhiko Tanaka; Kazunori Waki; Hideki Kaneda; Tomohiro Suzuki; Ikuko Yamada; Tamio Furuse; Kimio Kobayashi; Hiromi Motegi; Hideaki Toki; Maki Inoue; Osamu Minowa; Tetsuo Noda; Keizo Takao; Tsuyoshi Miyakawa; Aki Takahashi; Tsuyoshi Koide; Shigeharu Wakana; Hiroshi Masuya
Journal:  Bioinformatics       Date:  2010-03-01       Impact factor: 6.937

Review 7.  Genome-wide association studies in mice.

Authors:  Jonathan Flint; Eleazar Eskin
Journal:  Nat Rev Genet       Date:  2012-10-09       Impact factor: 53.242

8.  Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Authors:  John M Hancock; Ann-Marie Mallon; Tim Beck; Georgios V Gkoutos; Chris Mungall; Paul N Schofield
Journal:  Mamm Genome       Date:  2009-08-02       Impact factor: 2.957

9.  Systematic analysis, comparison, and integration of disease based human genetic association data and mouse genetic phenotypic information.

Authors:  Yonqing Zhang; Supriyo De; John R Garner; Kirstin Smith; S Alex Wang; Kevin G Becker
Journal:  BMC Med Genomics       Date:  2010-01-21       Impact factor: 3.063

10.  MouseBook: an integrated portal of mouse resources.

Authors:  Andrew Blake; Karen Pickford; Simon Greenaway; Steve Thomas; Amanda Pickard; Christine M Williamson; Niels C Adams; Alison Walling; Tim Beck; Martin Fray; Jo Peters; Tom Weaver; Steve D M Brown; John M Hancock; Ann-Marie Mallon
Journal:  Nucleic Acids Res       Date:  2009-10-23       Impact factor: 16.971

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