Literature DB >> 17435792

The role of ecological theory in microbial ecology.

James I Prosser1, Brendan J M Bohannan, Tom P Curtis, Richard J Ellis, Mary K Firestone, Rob P Freckleton, Jessica L Green, Laura E Green, Ken Killham, Jack J Lennon, A Mark Osborn, Martin Solan, Christopher J van der Gast, J Peter W Young.   

Abstract

Microbial ecology is currently undergoing a revolution, with repercussions spreading throughout microbiology, ecology and ecosystem science. The rapid accumulation of molecular data is uncovering vast diversity, abundant uncultivated microbial groups and novel microbial functions. This accumulation of data requires the application of theory to provide organization, structure, mechanistic insight and, ultimately, predictive power that is of practical value, but the application of theory in microbial ecology is currently very limited. Here we argue that the full potential of the ongoing revolution will not be realized if research is not directed and driven by theory, and that the generality of established ecological theory must be tested using microbial systems.

Mesh:

Year:  2007        PMID: 17435792     DOI: 10.1038/nrmicro1643

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  225 in total

1.  Genotypic distribution of a specialist model microorganism, Methanosaeta, along an estuarine gradient: does metabolic restriction limit niche differentiation potential?

Authors:  Franck Carbonero; Brian B Oakley; Robert J Hawkins; Kevin J Purdy
Journal:  Microb Ecol       Date:  2011-12-20       Impact factor: 4.552

Review 2.  From structure to function: the ecology of host-associated microbial communities.

Authors:  Courtney J Robinson; Brendan J M Bohannan; Vincent B Young
Journal:  Microbiol Mol Biol Rev       Date:  2010-09       Impact factor: 11.056

3.  Function-specific response to depletion of microbial diversity.

Authors:  Hannes Peter; Sara Beier; Stefan Bertilsson; Eva S Lindström; Silke Langenheder; Lars J Tranvik
Journal:  ISME J       Date:  2010-08-05       Impact factor: 10.302

4.  Dormancy contributes to the maintenance of microbial diversity.

Authors:  Stuart E Jones; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

Review 5.  The ecological coherence of high bacterial taxonomic ranks.

Authors:  Laurent Philippot; Siv G E Andersson; Tom J Battin; James I Prosser; Joshua P Schimel; William B Whitman; Sara Hallin
Journal:  Nat Rev Microbiol       Date:  2010-07       Impact factor: 60.633

Review 6.  Microorganisms and climate change: terrestrial feedbacks and mitigation options.

Authors:  Brajesh K Singh; Richard D Bardgett; Pete Smith; Dave S Reay
Journal:  Nat Rev Microbiol       Date:  2010-11       Impact factor: 60.633

7.  Environmental patterns are imposed on the population structure of Escherichia coli after fecal deposition.

Authors:  Peter W Bergholz; Jesse D Noar; Daniel H Buckley
Journal:  Appl Environ Microbiol       Date:  2010-11-12       Impact factor: 4.792

8.  Irrigation water quality and the benefits of implementing good agricultural practices during tomato (Lycopersicum esculentum) production.

Authors:  M Estrada-Acosta; M Jiménez; C Chaidez; J León-Félix; N Castro-Del Campo
Journal:  Environ Monit Assess       Date:  2014-03-31       Impact factor: 2.513

9.  EcoFABs: advancing microbiome science through standardized fabricated ecosystems.

Authors:  Karsten Zengler; Kirsten Hofmockel; Nitin S Baliga; Scott W Behie; Hans C Bernstein; James B Brown; José R Dinneny; Sheri A Floge; Samuel P Forry; Matthias Hess; Scott A Jackson; Christer Jansson; Stephen R Lindemann; Jennifer Pett-Ridge; Costas Maranas; Ophelia S Venturelli; Matthew D Wallenstein; Elizabeth A Shank; Trent R Northen
Journal:  Nat Methods       Date:  2019-07       Impact factor: 28.547

10.  The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale.

Authors:  Christina Hazard; Paul Gosling; Christopher J van der Gast; Derek T Mitchell; Fiona M Doohan; Gary D Bending
Journal:  ISME J       Date:  2012-10-25       Impact factor: 10.302

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