Literature DB >> 17428077

Surface accessibility of protein post-translational modifications.

Chi Nam Ignatius Pang1, Andrew Hayen, Marc Ronald Wilkins.   

Abstract

Protein post-translational modifications are crucial to the function of many proteins. In this study, we have investigated the structural environment of 8378 incidences of 44 types of post-translational modifications with 19 different approaches. We show that modified amino acids likely to be involved in protein-protein interactions, such as ester-linked phosphorylation, methylarginine, acetyllysine, sulfotyrosine, hydroxyproline, and hydroxylysine, are clearly surface associated. Other modifications, including O-GlcNAc, phosphohistidine, 4-aspartylphosphate, methyllysine, and ADP-ribosylarginine, are either not surface associated or are in a protein's core. Artifactual modifications were found to be randomly distributed throughout the protein. We discuss how the surface accessibility of post-translational modifications can be important for protein-protein interactivity.

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Year:  2007        PMID: 17428077     DOI: 10.1021/pr060674u

Source DB:  PubMed          Journal:  J Proteome Res        ISSN: 1535-3893            Impact factor:   4.466


  31 in total

1.  Software Analysis of Uncorrelated MS1 Peaks for Discovery of Post-Translational Modifications.

Authors:  Bruce D Pascal; Graham M West; Catherina Scharager-Tapia; Ricardo Flefil; Tina Moroni; Pablo Martinez-Acedo; Patrick R Griffin; Anthony C Carvalloza
Journal:  J Am Soc Mass Spectrom       Date:  2015-08-12       Impact factor: 3.109

2.  The structural and functional signatures of proteins that undergo multiple events of post-translational modification.

Authors:  Vikas Pejaver; Wei-Lun Hsu; Fuxiao Xin; A Keith Dunker; Vladimir N Uversky; Predrag Radivojac
Journal:  Protein Sci       Date:  2014-06-11       Impact factor: 6.725

3.  Carboxylator: incorporating solvent-accessible surface area for identifying protein carboxylation sites.

Authors:  Cheng-Tsung Lu; Shu-An Chen; Neil Arvin Bretaña; Tzu-Hsiu Cheng; Tzong-Yi Lee
Journal:  J Comput Aided Mol Des       Date:  2011-10-22       Impact factor: 3.686

4.  Structural determinants of limited proteolysis.

Authors:  Marat D Kazanov; Yoshinobu Igarashi; Alexey M Eroshkin; Piotr Cieplak; Boris Ratnikov; Ying Zhang; Zhanwen Li; Adam Godzik; Andrei L Osterman; Jeffrey W Smith
Journal:  J Proteome Res       Date:  2011-07-08       Impact factor: 4.466

5.  Correlation between posttranslational modification and intrinsic disorder in protein.

Authors:  Jianjiong Gao; Dong Xu
Journal:  Pac Symp Biocomput       Date:  2012

6.  SeMoP: a new computational strategy for the unrestricted search for modified peptides using LC-MS/MS data.

Authors:  Christian Baumgartner; Tomas Rejtar; Majlinda Kullolli; Lakshmi Manohar Akella; Barry L Karger
Journal:  J Proteome Res       Date:  2008-08-08       Impact factor: 4.466

Review 7.  Evolution of the arginase fold and functional diversity.

Authors:  D P Dowling; L Di Costanzo; H A Gennadios; D W Christianson
Journal:  Cell Mol Life Sci       Date:  2008-07       Impact factor: 9.261

8.  PMeS: prediction of methylation sites based on enhanced feature encoding scheme.

Authors:  Shao-Ping Shi; Jian-Ding Qiu; Xing-Yu Sun; Sheng-Bao Suo; Shu-Yun Huang; Ru-Ping Liang
Journal:  PLoS One       Date:  2012-06-15       Impact factor: 3.240

9.  Mining the TRAF6/p62 interactome for a selective ubiquitination motif.

Authors:  Trafina S Jadhav; Marie W Wooten; Michael C Wooten
Journal:  BMC Proc       Date:  2011-05-28

10.  Position-specific analysis and prediction for protein lysine acetylation based on multiple features.

Authors:  Sheng-Bao Suo; Jian-Ding Qiu; Shao-Ping Shi; Xing-Yu Sun; Shu-Yun Huang; Xiang Chen; Ru-Ping Liang
Journal:  PLoS One       Date:  2012-11-16       Impact factor: 3.240

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