Literature DB >> 17426354

Web-based method for translating neurodevelopment from laboratory species to humans.

Barbara Clancy1, Brandon Kersh, James Hyde, Richard B Darlington, K J S Anand, Barbara L Finlay.   

Abstract

Biomedical researchers and medical professionals are regularly required to compare a vast quantity of neurodevelopmental literature obtained from an assortment of mammals whose brains grow at diverse rates, including fast developing experimental rodent species and slower developing humans. In this article, we introduce a database-driven website, which was created to address this problem using statistical-based algorithms to integrate hundreds of empirically derived developing neural events in 10 mammalian species (http://translatingtime.net/). The site, based on a statistical model that has evolved over the past decade, currently incorporates 102 different neurodevelopmental events obtained from 10 species: hamsters, mice, rats, rabbits, spiny mice, guinea pigs, ferrets, cats, rhesus monkeys, and humans. Data are arranged in a Structured Query Language database, which allows comparative brain development measured in postconception days to be converted and accessed in real time, using Hypertext Preprocessor language. Algorithms applied to the database also allow predictions for dates of specific neurodevelopmental events where empirical data are not available, including for the human embryo and fetus. By designing a web-based portal, we seek to make these comparative data readily available to all those who need to efficiently estimate the timing of neurodevelopmental events in the human fetus, laboratory species, or across several different species. In an effort to further refine and expand the applicability of this database, we include a mechanism to submit additional data.

Entities:  

Mesh:

Year:  2007        PMID: 17426354     DOI: 10.1385/ni:5:1:79

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN: 1539-2791


  51 in total

1.  Developmental structure in brain evolution.

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Journal:  Behav Brain Sci       Date:  2001-04       Impact factor: 12.579

Review 2.  Neurogenesis in adult subventricular zone.

Authors:  Arturo Alvarez-Buylla; Jose Manuel Garcia-Verdugo
Journal:  J Neurosci       Date:  2002-02-01       Impact factor: 6.167

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4.  Synchronous bursts of action potentials in ganglion cells of the developing mammalian retina.

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Journal:  Science       Date:  1991-05-17       Impact factor: 47.728

Review 5.  HIV-1-induced neuronal injury in the developing brain.

Authors:  L G Epstein; H A Gelbard
Journal:  J Leukoc Biol       Date:  1999-04       Impact factor: 4.962

6.  Antenatal fetal heart rate variation in relation to the respiratory and metabolic status of the compromised human fetus.

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Journal:  Br J Obstet Gynaecol       Date:  1988-10

7.  Development of primary visual projections occurs entirely postnatally in the fat-tailed dunnart, a marsupial mouse, Sminthopsis crassicaudata.

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Journal:  J Comp Neurol       Date:  1997-07-21       Impact factor: 3.215

Review 8.  Timetables of neurogenesis in the human brain based on experimentally determined patterns in the rat.

Authors:  S A Bayer; J Altman; R J Russo; X Zhang
Journal:  Neurotoxicology       Date:  1993       Impact factor: 4.294

9.  Translating developmental time across mammalian species.

Authors:  B Clancy; R B Darlington; B L Finlay
Journal:  Neuroscience       Date:  2001       Impact factor: 3.590

10.  Fetal hand movements and facial expression in normal pregnancy studied by four-dimensional sonography.

Authors:  Asim Kurjak; Guillermo Azumendi; Nenad Vecek; Sanja Kupesic; Meliha Solak; Dino Varga; Frank Chervenak
Journal:  J Perinat Med       Date:  2003       Impact factor: 1.901

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  157 in total

1.  Effects of developmental stress and lead (Pb) on corticosterone after chronic and acute stress, brain monoamines, and blood Pb levels in rats.

Authors:  Devon L Graham; Curtis E Grace; Amanda A Braun; Tori L Schaefer; Matthew R Skelton; Peter H Tang; Charles V Vorhees; Michael T Williams
Journal:  Int J Dev Neurosci       Date:  2010-10-08       Impact factor: 2.457

Review 2.  Protecting motor networks during perinatal ischemia: the case for delta-opioid receptors.

Authors:  Stephen M Johnson; Sara M F Turner
Journal:  Ann N Y Acad Sci       Date:  2010-06       Impact factor: 5.691

3.  Strategies to defeat ketamine-induced neonatal brain injury.

Authors:  C P Turner; S Gutierrez; C Liu; L Miller; J Chou; B Finucane; A Carnes; J Kim; E Shing; T Haddad; A Phillips
Journal:  Neuroscience       Date:  2012-02-23       Impact factor: 3.590

4.  Expansion, folding, and abnormal lamination of the chick optic tectum after intraventricular injections of FGF2.

Authors:  Luke D McGowan; Roula A Alaama; Amanda C Freise; Johnny C Huang; Christine J Charvet; Georg F Striedter
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-20       Impact factor: 11.205

5.  Retinal input influences the size and corticocortical connectivity of visual cortex during postnatal development in the ferret.

Authors:  A S Bock; C D Kroenke; E N Taber; J F Olavarria
Journal:  J Comp Neurol       Date:  2012-04-01       Impact factor: 3.215

6.  Pre- and/or postnatal protein restriction in rats impairs learning and motivation in male offspring.

Authors:  L A Reyes-Castro; J S Rodriguez; G L Rodríguez-González; R D Wimmer; T J McDonald; F Larrea; P W Nathanielsz; E Zambrano
Journal:  Int J Dev Neurosci       Date:  2010-11-13       Impact factor: 2.457

7.  Short- and long-term effects of (+)-methamphetamine and (+/-)-3,4-methylenedioxymethamphetamine on monoamine and corticosterone levels in the neonatal rat following multiple days of treatment.

Authors:  Tori L Schaefer; Matthew R Skelton; Nicole R Herring; Gary A Gudelsky; Charles V Vorhees; Michael T Williams
Journal:  J Neurochem       Date:  2007-11-06       Impact factor: 5.372

8.  Age-dependent effects of neonatal methamphetamine exposure on spatial learning.

Authors:  Charles V Vorhees; Matthew R Skelton; Michael T Williams
Journal:  Behav Pharmacol       Date:  2007-09       Impact factor: 2.293

Review 9.  Changing mechanisms of opiate tolerance and withdrawal during early development: animal models of the human experience.

Authors:  Gordon A Barr; Anika McPhie-Lalmansingh; Jessica Perez; Michelle Riley
Journal:  ILAR J       Date:  2011

10.  Longitudinal 1H MRS of rat forebrain from infancy to adulthood reveals adolescence as a distinctive phase of neurometabolite development.

Authors:  Jonathan J Morgan; Gale A Kleven; Christina D Tulbert; John Olson; David A Horita; April E Ronca
Journal:  NMR Biomed       Date:  2013-01-16       Impact factor: 4.044

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