Literature DB >> 17417645

A genomic integration method to visualize localization of endogenous mRNAs in living yeast.

Liora Haim1, Gadi Zipor, Stella Aronov, Jeffrey E Gerst.   

Abstract

mRNA localization may be an important determinant for protein localization. We describe a simple PCR-based genomic-tagging strategy (m-TAG) that uses homologous recombination to insert binding sites for the RNA-binding MS2 coat protein (MS2-CP) between the coding region and 3' untranslated region (UTR) of any yeast gene. Upon coexpression of MS2-CP fused with GFP, we demonstrate the localization of endogenous mRNAs (ASH1, SRO7, PEX3 and OXA1) in living yeast (Saccharomyces cerevisiae).

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Year:  2007        PMID: 17417645     DOI: 10.1038/nmeth1040

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  52 in total

1.  Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function.

Authors:  Michael A Thompson; Jason M Casolari; Majid Badieirostami; Patrick O Brown; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  A genomic integration method for the simultaneous visualization of endogenous mRNAs and their translation products in living yeast.

Authors:  Liora Haim-Vilmovsky; Noga Gadir; Rebecca H Herbst; Jeffrey E Gerst
Journal:  RNA       Date:  2011-10-24       Impact factor: 4.942

3.  Helper virus-independent transcription and multimerization of a satellite RNA associated with cucumber mosaic virus.

Authors:  Soon Ho Choi; Jang-Kyun Seo; Sun-Jung Kwon; A L N Rao
Journal:  J Virol       Date:  2012-02-29       Impact factor: 5.103

4.  A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes.

Authors:  Boris Slobodin; Jeffrey E Gerst
Journal:  RNA       Date:  2010-09-28       Impact factor: 4.942

Review 5.  Imaging intracellular RNA distribution and dynamics in living cells.

Authors:  Sanjay Tyagi
Journal:  Nat Methods       Date:  2009-05       Impact factor: 28.547

Review 6.  Structural Principles of Fluorescent RNA Aptamers.

Authors:  Robert J Trachman; Lynda Truong; Adrian R Ferré-D'Amaré
Journal:  Trends Pharmacol Sci       Date:  2017-07-17       Impact factor: 14.819

7.  A bromodomain-containing host protein mediates the nuclear importation of a satellite RNA of Cucumber mosaic virus.

Authors:  Sonali Chaturvedi; Kriton Kalantidis; A L N Rao
Journal:  J Virol       Date:  2013-11-27       Impact factor: 5.103

8.  Localization of mRNAs coding for peroxisomal proteins in the yeast, Saccharomyces cerevisiae.

Authors:  Gadi Zipor; Liora Haim-Vilmovsky; Rita Gelin-Licht; Noga Gadir; Cecile Brocard; Jeffrey E Gerst
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-10       Impact factor: 11.205

9.  The yeast Cbk1 kinase regulates mRNA localization via the mRNA-binding protein Ssd1.

Authors:  Cornelia Kurischko; Hong Kyung Kim; Venkata K Kuravi; Juliane Pratzka; Francis C Luca
Journal:  J Cell Biol       Date:  2011-02-21       Impact factor: 10.539

10.  The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.

Authors:  Julian König; Sebastian Baumann; Janine Koepke; Thomas Pohlmann; Kathi Zarnack; Michael Feldbrügge
Journal:  EMBO J       Date:  2009-06-04       Impact factor: 11.598

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