Literature DB >> 17411021

Density-functional, density-functional tight-binding, and wave function calculations on biomolecular systems.

Tomas Kubar1, Petr Jurecka, Jirí Cerný, Jan Rezac, Michal Otyepka, Haydée Valdés, Pavel Hobza.   

Abstract

Recently, two computational approaches that supply a density-functional-based quantum-chemical method with an empirical term accounting for London dispersion were introduced and found use in the studies of biomolecular systems, namely, DFT-D and SCC-DFTB-D. Here, we examine the performance and usability of these combined techniques for dealing with several tasks typically occurring in the research of biomolecules. The interaction energy of small biomolecular complexes agrees very well with the reference data yielded by correlated ab initio quantum chemical methods. In real-life studies aimed at interaction energy, structure, and infrared spectra, the mentioned methods provide results in good agreement with each other and with experiment (where available). The very favorable time demands of these approaches are discussed, and for each of them, a suitable area of use is proposed on the basis of the results of our analysis.

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Year:  2007        PMID: 17411021     DOI: 10.1021/jp068858j

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  2 in total

1.  Probing substituent effects in aryl-aryl interactions using stereoselective Diels-Alder cycloadditions.

Authors:  Steven E Wheeler; Anne J McNeil; Peter Müller; Timothy M Swager; K N Houk
Journal:  J Am Chem Soc       Date:  2010-03-17       Impact factor: 15.419

2.  Nitrogen substituted phenothiazine derivatives: modelling of molecular self-assembling.

Authors:  Attila Bende; Ioan Turcu
Journal:  Int J Mol Sci       Date:  2011-05-12       Impact factor: 5.923

  2 in total

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