Literature DB >> 17410055

[Difficulties in using archival paraffin-embedded tissues for RNA expression analysis].

Agnieszka Korga1, Katarzyna Wilkołaska, Elzbieta Korobowicz.   

Abstract

Formalin-fixed and paraffin-embedded tissue sections are used for routine histopathological diagnostics, but they have increasingly become material for molecular studies of genome and gene expression using molecular biological techniques such as PCR and RT-PCR. A major limitation is the significant degree of degradation and chemical modification of the nucleic acids recovered from fixed tissues. The purpose of this review is to provide an overview of studies on the possibility of using routinely prepared paraffin-embedded tissue sections as a source of messenger RNA. Difficulties in recovering high-quality RNA are mainly connected with the influence of formalin on nucleic acids and the effects of other physical and chemical agents on tissue during preservation and fixation. It is necessary to optimize RNA isolation and polymerase chain reaction conditions. Special attention is paid to the rising need to introduce alternative techniques for the fixation of tissue sections that provide for better preservation of both macromolecules and tissue morphology and for conducting histological diagnostics with molecular studies.

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Year:  2007        PMID: 17410055

Source DB:  PubMed          Journal:  Postepy Hig Med Dosw (Online)        ISSN: 0032-5449            Impact factor:   0.270


  5 in total

1.  High stability of microRNAs in tissue samples of compromised quality.

Authors:  Lorena Peiró-Chova; María Peña-Chilet; José Antonio López-Guerrero; José Luis García-Giménez; Elisa Alonso-Yuste; Octavio Burgues; Ana Lluch; Jaime Ferrer-Lozano; Gloria Ribas
Journal:  Virchows Arch       Date:  2013-10-03       Impact factor: 4.064

2.  Ribonucleic acid extraction from archival formalin fixed paraffin embedded myocardial tissues for gene expression and pathogen detection.

Authors:  Mirnalini Sharma; Baijayantimala Mishra; Uma N Saikia; Ajay Bahl; Radha K Ratho; Kewal K Talwar
Journal:  J Clin Lab Anal       Date:  2012-07       Impact factor: 2.352

3.  Evaluation and validation of total RNA extraction methods for microRNA expression analyses in formalin-fixed, paraffin-embedded tissues.

Authors:  Martina Doleshal; Amber A Magotra; Bhavna Choudhury; Brian D Cannon; Emmanuel Labourier; Anna E Szafranska
Journal:  J Mol Diagn       Date:  2008-04-10       Impact factor: 5.568

4.  Ultrasound-accelerated formalin fixation improves the preservation of nucleic acids extraction in histological sections.

Authors:  Tony Fracasso; Marielle Heinrich; Carsten Hohoff; Bernd Brinkmann; Heidi Pfeiffer
Journal:  Int J Legal Med       Date:  2009-08-14       Impact factor: 2.686

5.  Transforming growth factor-β1 in plaque morphea.

Authors:  Aleksandra Dańczak-Pazdrowska; Michał J Kowalczyk; Beata Szramka-Pawlak; Justyna Gornowicz-Porowska; Aleksandra Szewczyk; Wojciech Silny; Marta Molińska-Glura; Anna Olewicz-Gawlik; Ryszard Zaba; Jakub Pazdrowski; Paweł Hrycaj
Journal:  Postepy Dermatol Alergol       Date:  2013-12-18       Impact factor: 1.837

  5 in total

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