Literature DB >> 17403053

Construction of a river buffalo (Bubalus bubalis) whole-genome radiation hybrid panel and preliminary RH mapping of chromosomes 3 and 10.

M E J Amaral1, K E Owens, J S Elliott, C Fickey, A A Schäffer, R Agarwala, J E Womack.   

Abstract

The buffalo (Bubalus bubalis) is a source of milk and meat, and also serves as a draft animal. In this study, a 5000-rad whole-genome radiation hybrid (RH) panel for river buffalo was constructed and used to build preliminary RH maps for BBU3 and BBU10 chromosomes. The preliminary maps contain 66 markers, including coding genes, cattle expressed sequence tags (ESTs) and microsatellite loci. The RH maps presented here are the starting point for mapping additional loci that will allow detailed comparative maps between buffalo, cattle and other species whose genomes may be mapped in the future. A large quantity of DNA has been prepared from the cell lines forming the river buffalo RH panel and will be made publicly available to the international community both for the study of chromosome evolution and for the improvement of traits important to the role of buffalo in animal agriculture.

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Year:  2007        PMID: 17403053     DOI: 10.1111/j.1365-2052.2007.01587.x

Source DB:  PubMed          Journal:  Anim Genet        ISSN: 0268-9146            Impact factor:   3.169


  8 in total

Review 1.  Water buffalo genome science comes of age.

Authors:  Vanessa N Michelizzi; Michael V Dodson; Zengxiang Pan; M Elisabete J Amaral; Jennifer J Michal; Derek J McLean; James E Womack; Zhihua Jiang
Journal:  Int J Biol Sci       Date:  2010-06-17       Impact factor: 6.580

2.  A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 1 (BBU1).

Authors:  M N Miziara; T Goldammer; N B Stafuzza; P Ianella; R Agarwala; A A Schaffer; J S Elliott; P K Riggs; J E Womack; M E J Amaral
Journal:  Cytogenet Genome Res       Date:  2007-12-14       Impact factor: 1.636

3.  An extended river buffalo (Bubalus bubalis, 2n = 50) cytogenetic map: assignment of 68 autosomal loci by FISH-mapping and R-banding and comparison with human chromosomes.

Authors:  G P Di Meo; A Perucatti; S Floriot; H Hayes; L Schibler; D Incarnato; D Di Berardino; J Williams; E Cribiu; A Eggen; L Iannuzzi
Journal:  Chromosome Res       Date:  2008-07-26       Impact factor: 5.239

4.  A radiation hybrid map of river buffalo (Bubalus bubalis) chromosome 7 and comparative mapping to the cattle and human genomes.

Authors:  T Goldammer; R Weikard; M N Miziara; R M Brunner; R Agarwala; A A Schaffer; J E Womack; M E J Amaral
Journal:  Cytogenet Genome Res       Date:  2008-02-01       Impact factor: 1.636

5.  A first generation whole genome RH map of the river buffalo with comparison to domestic cattle.

Authors:  M Elisabete J Amaral; Jason R Grant; Penny K Riggs; Nedenia B Stafuzza; Edson A Rodrigues Filho; Tom Goldammer; Rosemarie Weikard; Ronald M Brunner; Kelli J Kochan; Anthony J Greco; Jooha Jeong; Zhipeng Cai; Guohui Lin; Aparna Prasad; Satish Kumar; G Pardha Saradhi; Boby Mathew; M Aravind Kumar; Melissa N Miziara; Paola Mariani; Alexandre R Caetano; Stephan R Galvão; Madhu S Tantia; Ramesh K Vijh; Bina Mishra; S T Bharani Kumar; Vanderlei A Pelai; Andre M Santana; Larissa C Fornitano; Brittany C Jones; Humberto Tonhati; Stephen Moore; Paul Stothard; James E Womack
Journal:  BMC Genomics       Date:  2008-12-24       Impact factor: 3.969

6.  Application of dissociation curve analysis to radiation hybrid panel marker scoring: generation of a map of river buffalo (B. bubalis) chromosome 20.

Authors:  Kelli J Kochan; M Elisabete J Amaral; Richa Agarwala; Alejandro A Schäffer; Penny K Riggs
Journal:  BMC Genomics       Date:  2008-11-17       Impact factor: 3.969

7.  Construction of two whole genome radiation hybrid panels for dromedary (Camelus dromedarius): 5000RAD and 15000RAD.

Authors:  Polina L Perelman; Rudolf Pichler; Anna Gaggl; Denis M Larkin; Terje Raudsepp; Fahad Alshanbari; Heather M Holl; Samantha A Brooks; Pamela A Burger; Kathiravan Periasamy
Journal:  Sci Rep       Date:  2018-01-31       Impact factor: 4.379

Review 8.  Whole-Genome Sequencing and Characterization of Buffalo Genetic Resources: Recent Advances and Future Challenges.

Authors:  Saif Ur Rehman; Faiz-Ul Hassan; Xier Luo; Zhipeng Li; Qingyou Liu
Journal:  Animals (Basel)       Date:  2021-03-22       Impact factor: 2.752

  8 in total

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