Literature DB >> 17401540

Phylotype diversity of deep-sea hydrothermal vent prokaryotes trapped by 0.2- and 0.1-microm-pore-size filters.

Takeshi Naganuma1, Tatsuo Miyoshi, Hiroyuki Kimura.   

Abstract

Eleven 16S rRNA gene clone libraries including 34 archaeal and 72 bacterial phylotypes were constructed from total 708 clones of hydrothermal vent prokaryotes trapped by 0.2- and 0.1-microm-pore-size filters. Crenarchaeota and Proteobacteria phylotypes dominated the archaeal and bacterial populations, respectively. Novel unaffiliated phylotypes occurred only in the 0.1-microm-trapped populations.

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Year:  2007        PMID： 17401540     DOI： 10.1007/s00792-007-0070-5

Source DB:  PubMed          Journal:  Extremophiles        ISSN： 1431-0651            Impact factor:   2.395


  21 in total

1.  Genetic diversity of archaea in deep-sea hydrothermal vent environments.

Authors:  K Takai; K Horikoshi
Journal:  Genetics       Date:  1999-08       Impact factor: 4.562

2.  Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific.

Authors:  Tatsunori Nakagawa; Jun-Ichiro Ishibashi; Akihiko Maruyama; Toshiro Yamanaka; Yusuke Morimoto; Hiroyuki Kimura; Tetsuro Urabe; Manabu Fukui
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

3.  Broad diversity of viable bacteria in 'sterile' (0.2 microm) filtered water.

Authors:  Martin W Hahn
Journal:  Res Microbiol       Date:  2004-10       Impact factor: 3.992

4.  Strain-specific differences in the grazing sensitivities of closely related ultramicrobacteria affiliated with the Polynucleobacter cluster.

Authors:  Jens Boenigk; Peter Stadler; Anneliese Wiedlroither; Martin W Hahn
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

5.  Phylogenetic characterization of 16S rRNA gene clones from deep-groundwater microorganisms that pass through 0.2-micrometer-pore-size filters.

Authors:  Tatsuo Miyoshi; Teruki Iwatsuki; Takeshi Naganuma
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

6.  Archaea in coastal marine environments.

Authors:  E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

7.  Microbial diversity in hydrothermal surface to subsurface environments of Suiyo Seamount, Izu-Bonin Arc, using a catheter-type in situ growth chamber.

Authors:  Yowsuke Higashi; Michinari Sunamura; Keiko Kitamura; Ko-ichi Nakamura; Yasurou Kurusu; Jun-ichiro Ishibashi; Tetsuro Urabe; Akihiko Maruyama
Journal:  FEMS Microbiol Ecol       Date:  2004-03-01       Impact factor: 4.194

8.  Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval.

Authors:  R Grosskopf; P H Janssen; W Liesack
Journal:  Appl Environ Microbiol       Date:  1998-03       Impact factor: 4.792

9.  Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume.

Authors:  Michinari Sunamura; Yowsuke Higashi; Chiwaka Miyako; Jun-ichiro Ishibashi; Akihiko Maruyama
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

10.  Isolation of strains belonging to the cosmopolitan Polynucleobacter necessarius cluster from freshwater habitats located in three climatic zones.

Authors:  Martin W Hahn
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792
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  8 in total

1.  Metagenomic analysis of 0.2-μm-passable microorganisms in deep-sea hydrothermal fluid.

Authors:  Ryosuke Nakai; Takashi Abe; Haruko Takeyama; Takeshi Naganuma
Journal:  Mar Biotechnol (NY)       Date:  2011-01-29       Impact factor: 3.619

2.  Brine assemblages of ultrasmall microbial cells within the ice cover of Lake Vida, Antarctica.

Authors:  Emanuele Kuhn; Andrew S Ichimura; Vivian Peng; Christian H Fritsen; Gareth Trubl; Peter T Doran; Alison E Murray
Journal:  Appl Environ Microbiol       Date:  2014-06       Impact factor: 4.792

Review 3.  The biological deep sea hydrothermal vent as a model to study carbon dioxide capturing enzymes.

Authors:  Zoran Minic; Premila D Thongbam
Journal:  Mar Drugs       Date:  2011-04-28       Impact factor: 6.085

4.  Batch-Learning Self-Organizing Map Identifies Horizontal Gene Transfer Candidates and Their Origins in Entire Genomes.

Authors:  Takashi Abe; Yu Akazawa; Atsushi Toyoda; Hironori Niki; Tomoya Baba
Journal:  Front Microbiol       Date:  2020-07-03       Impact factor: 5.640

Review 5.  Size Matters: Ultra-small and Filterable Microorganisms in the Environment.

Authors:  Ryosuke Nakai
Journal:  Microbes Environ       Date:  2020       Impact factor: 2.912

Review 6.  Diversity, Ecology, and Prevalence of Antimicrobials in Nature.

Authors:  Megan M Mullis; Ian M Rambo; Brett J Baker; Brandi Kiel Reese
Journal:  Front Microbiol       Date:  2019-11-14       Impact factor: 5.640

7.  Oligoflexus tunisiensis gen. nov., sp. nov., a Gram-negative, aerobic, filamentous bacterium of a novel proteobacterial lineage, and description of Oligoflexaceae fam. nov., Oligoflexales ord. nov. and Oligoflexia classis nov.

Authors:  Ryosuke Nakai; Miyuki Nishijima; Nozomi Tazato; Yutaka Handa; Fatma Karray; Sami Sayadi; Hiroko Isoda; Takeshi Naganuma
Journal:  Int J Syst Evol Microbiol       Date:  2014-07-10       Impact factor: 2.747

8.  Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean.

Authors:  Frank O Aylward; Alyson E Santoro
Journal:  mSystems       Date:  2020-06-16       Impact factor: 6.496
  8 in total

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