Literature DB >> 17400702

A new approach to the detection and statistical classification of Ca2+ sparks.

Tamás Bányász1, Ye Chen-Izu, C W Balke, Leighton T Izu.   

Abstract

The availability of high-speed, two-dimensional (2-D) confocal microscopes and the expanding armamentarium of fluorescent probes presents unprecedented opportunities and new challenges for studying the spatial and temporal dynamics of cellular processes. The need to remove subjectivity from the detection process, the difficulty of the human eye to detect subtle changes in fluorescence in these 2-D images, and the large volume of data produced by these confocal microscopes call for the need to develop algorithms to automatically mark the changes in fluorescence. These fluorescence signal changes are often subtle, so the statistical estimate of the likelihood that the detected signal is not noise is an integral part of the detection algorithm. This statistical estimation is fundamental to our new approach to detection; in earlier Ca(2+) spark detectors, this statistical assessment was incidental to detection. Importantly, the use of the statistical properties of the signal local to the spark, instead of over the whole image, reduces the false positive and false negative rates. We developed an automatic spark detection algorithm based on these principles and used it to detect sparks on an inhomogeneous background of transverse tubule-labeled rat ventricular cells. Because of the large region of the cell surveyed by the confocal microscope, we can detect a large enough number of sparks to measure the dynamic changes in spark frequency in individual cells. We also found, in contrast to earlier results, that cardiac sparks are spatially symmetric. This new approach puts the detection of fluorescent signals on a firm statistical foundation.

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Year:  2007        PMID: 17400702      PMCID: PMC1877760          DOI: 10.1529/biophysj.106.103069

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  Large currents generate cardiac Ca2+ sparks.

Authors:  L T Izu; J R Mauban; C W Balke; W G Wier
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  Evolution of cardiac calcium waves from stochastic calcium sparks.

Authors:  L T Izu; W G Wier; C W Balke
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

3.  Ca2+ sparks and Ca2+ waves in saponin-permeabilized rat ventricular myocytes.

Authors:  V Lukyanenko; S Gyorke
Journal:  J Physiol       Date:  1999-12-15       Impact factor: 5.182

4.  Spatiotemporal characteristics of junctional and nonjunctional focal Ca2+ release in rat atrial myocytes.

Authors:  Sun-Hee Woo; Lars Cleemann; Martin Morad
Journal:  Circ Res       Date:  2003-01-10       Impact factor: 17.367

5.  Role of the transverse-axial tubule system in generating calcium sparks and calcium transients in rat atrial myocytes.

Authors:  Malcolm M Kirk; Leighton T Izu; Ye Chen-Izu; Stacey L McCulle; W Gil Wier; C William Balke; Stephen R Shorofsky
Journal:  J Physiol       Date:  2003-01-31       Impact factor: 5.182

Review 6.  At the crossroads of myocardial signaling: the role of Z-discs in intracellular signaling and cardiac function.

Authors:  W Glen Pyle; R John Solaro
Journal:  Circ Res       Date:  2004-02-20       Impact factor: 17.367

7.  Interplay of ryanodine receptor distribution and calcium dynamics.

Authors:  Leighton T Izu; Shawn A Means; John N Shadid; Ye Chen-Izu; C William Balke
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

Review 8.  Excitation-contraction coupling in heart: new insights from Ca2+ sparks.

Authors:  H Cheng; M R Lederer; R P Xiao; A M Gómez; Y Y Zhou; B Ziman; H Spurgeon; E G Lakatta; W J Lederer
Journal:  Cell Calcium       Date:  1996-08       Impact factor: 6.817

9.  Calcium gradients during excitation-contraction coupling in cat atrial myocytes.

Authors:  J Hüser; S L Lipsius; L A Blatter
Journal:  J Physiol       Date:  1996-08-01       Impact factor: 5.182

10.  Local Ca2+ transients (Ca2+ sparks) originate at transverse tubules in rat heart cells.

Authors:  P S Shacklock; W G Wier; C W Balke
Journal:  J Physiol       Date:  1995-09-15       Impact factor: 5.182

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  23 in total

1.  Superoxide flashes reveal novel properties of mitochondrial reactive oxygen species excitability in cardiomyocytes.

Authors:  Kaitao Li; Wanrui Zhang; Huaqiang Fang; Wenjun Xie; Jie Liu; Ming Zheng; Xianhua Wang; Wang Wang; Wenchang Tan; Heping Cheng
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

2.  Tracking stars: automated two-dimensional analysis of Ca²⁺ events. Focus on "Automated region of interest analysis of dynamic Ca²⁺ signals in image sequences".

Authors:  Kay-Pong Yip; James S K Sham
Journal:  Am J Physiol Cell Physiol       Date:  2012-05-30       Impact factor: 4.249

3.  Eavesdropping on the social lives of Ca(2+) sparks.

Authors:  Leighton T Izu; Tamás Bányász; C William Balke; Ye Chen-Izu
Journal:  Biophys J       Date:  2007-08-03       Impact factor: 4.033

4.  Increasing sensitivity of Ca2+ spark detection in noisy images by application of a matched-filter object detection algorithm.

Authors:  Cherrie H T Kong; Christian Soeller; Mark B Cannell
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

5.  CellSpecks: A Software for Automated Detection and Analysis of Calcium Channels in Live Cells.

Authors:  Syed Islamuddin Shah; Martin Smith; Divya Swaminathan; Ian Parker; Ghanim Ullah; Angelo Demuro
Journal:  Biophys J       Date:  2018-10-25       Impact factor: 4.033

6.  An algorithm for automated detection, localization and measurement of local calcium signals from camera-based imaging.

Authors:  Kyle L Ellefsen; Brett Settle; Ian Parker; Ian F Smith
Journal:  Cell Calcium       Date:  2014-06-24       Impact factor: 6.817

7.  PunctaSpecks: A tool for automated detection, tracking, and analysis of multiple types of fluorescently labeled biomolecules.

Authors:  Syed Islamuddin Shah; Hwei Ling Ong; Angelo Demuro; Ghanim Ullah
Journal:  Cell Calcium       Date:  2020-05-25       Impact factor: 6.817

Review 8.  Ca²⁺ waves in the heart.

Authors:  Leighton T Izu; Yuanfang Xie; Daisuke Sato; Tamás Bányász; Ye Chen-Izu
Journal:  J Mol Cell Cardiol       Date:  2012-12-05       Impact factor: 5.000

Review 9.  Fast kinetics of calcium signaling and sensor design.

Authors:  Shen Tang; Florence Reddish; You Zhuo; Jenny J Yang
Journal:  Curr Opin Chem Biol       Date:  2015-07-04       Impact factor: 8.822

10.  Isoproterenol increases the fraction of spark-dependent RyR-mediated leak in ventricular myocytes.

Authors:  Demetrio J Santiago; Eduardo Ríos; Thomas R Shannon
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

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