Literature DB >> 17396253

Metagenomics, biotechnology with non-culturable microbes.

Christel Schmeisser1, Helen Steele, Wolfgang R Streit.   

Abstract

Metagenomics as a new field of research has been developed over the past decade to elucidate the genomes of the non-cultured microbes with the goal to better understand global microbial ecology on the one side, and on the other side it has been driven by the increasing biotechnological demands for novel enzymes and biomolecules. Since it is well accepted that the majority of all microbes has not yet been cultured, the not-yet-cultivated microbes represent a shear unlimited and intriguing resource for the development of novel genes, enzymes and chemical compounds for use in biotechnology. However, with respect to biotechnology, metagenomics faces now two major challenges. Firstly, it has to identify truly novel biocatalysts to fulfil the needs of industrial processes and green chemistry. Secondly, the already available genes and enzymes need to be implemented in production processes to further prove the value of metagenome-derived sequences.

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Year:  2007        PMID: 17396253     DOI: 10.1007/s00253-007-0945-5

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  62 in total

1.  Microbiome of fungus-growing termites: a new reservoir for lignocellulase genes.

Authors:  Ning Liu; Xing Yan; Meiling Zhang; Lei Xie; Qian Wang; Yongping Huang; Xuguo Zhou; Shengyue Wang; Zhihua Zhou
Journal:  Appl Environ Microbiol       Date:  2010-11-05       Impact factor: 4.792

2.  Isolation of α-glucuronidase enzyme from a rumen metagenomic library.

Authors:  Charles C Lee; Rena E Kibblewhite; Kurt Wagschal; Ruiping Li; William J Orts
Journal:  Protein J       Date:  2012-03       Impact factor: 2.371

3.  Identification of direct residue contacts in protein-protein interaction by message passing.

Authors:  Martin Weigt; Robert A White; Hendrik Szurmant; James A Hoch; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-30       Impact factor: 11.205

4.  Novel cold-adapted alkaline lipase from an intertidal flat metagenome and proposal for a new family of bacterial lipases.

Authors:  Eun-Young Kim; Ki-Hoon Oh; Mi-Hwa Lee; Chul-Hyung Kang; Tae-Kwang Oh; Jung-Hoon Yoon
Journal:  Appl Environ Microbiol       Date:  2008-10-17       Impact factor: 4.792

5.  Isolation and characterization of a metagenome-derived thermoalkaliphilic esterase with high stability over a broad pH range.

Authors:  Ji-Eun Choi; Min-A Kwon; Hye Young Na; Dae-Hyun Hahm; Jae Kwang Song
Journal:  Extremophiles       Date:  2013-09-13       Impact factor: 2.395

Review 6.  Microbial fuel cells and microbial ecology: applications in ruminant health and production research.

Authors:  Orianna Bretschger; Jason B Osterstock; William E Pinchak; Shun'ichi Ishii; Karen E Nelson
Journal:  Microb Ecol       Date:  2009-12-22       Impact factor: 4.552

Review 7.  Marine Bacterial Esterases: Emerging Biocatalysts for Industrial Applications.

Authors:  Noora Barzkar; Muhammad Sohail; Saeid Tamadoni Jahromi; Mohsen Gozari; Sajjad Poormozaffar; Reza Nahavandi; Mahmoud Hafezieh
Journal:  Appl Biochem Biotechnol       Date:  2021-01-07       Impact factor: 2.926

8.  Metagenome-derived clones encoding two novel lactonase family proteins involved in biofilm inhibition in Pseudomonas aeruginosa.

Authors:  C Schipper; C Hornung; P Bijtenhoorn; M Quitschau; S Grond; W R Streit
Journal:  Appl Environ Microbiol       Date:  2008-11-07       Impact factor: 4.792

9.  MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors:  Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal:  DNA Res       Date:  2008-10-21       Impact factor: 4.458

10.  The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments.

Authors:  Isaam Saeed; Saman K Halgamuge
Journal:  BMC Genomics       Date:  2009-12-03       Impact factor: 3.969

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