Literature DB >> 17395283

The ins and outs of ATP-dependent chromatin remodeling in budding yeast: biophysical and proteomic perspectives.

Joke J F A van Vugt1, Michael Ranes, Coen Campsteijn, Colin Logie.   

Abstract

ATP-dependent chromatin remodeling is performed by multi-subunit protein complexes. Over the last years, the identity of these factors has been unveiled in yeast and many parallels have been drawn with animal and plant systems, indicating that sophisticated chromatin transactions evolved prior to their divergence. Here we review current knowledge pertaining to the molecular mode of action of ATP-dependent chromatin remodeling, from single molecule studies to genome-wide genetic and proteomic studies. We focus on the budding yeast versions of SWI/SNF, RSC, DDM1, ISWI, CHD1, INO80 and SWR1.

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Year:  2007        PMID： 17395283     DOI： 10.1016/j.bbaexp.2007.01.013

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN： 0006-3002


  21 in total

1.  Does brassinosteroid function require chromatin remodeling?

Authors:  Tomoaki Shigeta; Yuya Yoshimitsu; Yasushi Nakamura; Shigehisa Okamoto; Tomoaki Matsuo
Journal:  Plant Signal Behav       Date:  2011-11-01

2.  dCHD3, a novel ATP-dependent chromatin remodeler associated with sites of active transcription.

Authors:  Magdalena Murawska; Natascha Kunert; Joke van Vugt; Gernot Längst; Elisabeth Kremmer; Colin Logie; Alexander Brehm
Journal:  Mol Cell Biol       Date:  2008-02-04       Impact factor: 4.272

3.  Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy.

Authors:  Thijn van der Heijden; Joke J F A van Vugt; Colin Logie; John van Noort
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

4.  Analysis of individual remodeled nucleosomes reveals decreased histone-DNA contacts created by hSWI/SNF.

Authors:  Karim Bouazoune; Tina B Miranda; Peter A Jones; Robert E Kingston
Journal:  Nucleic Acids Res       Date:  2009-06-30       Impact factor: 16.971

5.  Genetic interactions between a phospholipase A2 and the Rim101 pathway components in S. cerevisiae reveal a role for this pathway in response to changes in membrane composition and shape.

Authors:  M Mattiazzi; A Jambhekar; P Kaferle; J L Derisi; I Krizaj; U Petrovic
Journal:  Mol Genet Genomics       Date:  2010-04-09       Impact factor: 3.291

6.  Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae.

Authors:  Eva Klopf; Ludmila Paskova; Carme Solé; Gloria Mas; Andriy Petryshyn; Francesc Posas; Ulrike Wintersberger; Gustav Ammerer; Christoph Schüller
Journal:  Mol Cell Biol       Date:  2009-07-20       Impact factor: 4.272

7.  Stress-dependent coordination of transcriptome and translatome in yeast.

Authors:  Regula E Halbeisen; André P Gerber
Journal:  PLoS Biol       Date:  2009-05-05       Impact factor: 8.029

8.  The Schizosaccharomyces pombe JmjC-protein, Msc1, prevents H2A.Z localization in centromeric and subtelomeric chromatin domains.

Authors:  Luke Buchanan; Mickaël Durand-Dubief; Assen Roguev; Cagri Sakalar; Brian Wilhelm; Annelie Strålfors; Anna Shevchenko; Rein Aasland; Andrej Shevchenko; Karl Ekwall; A Francis Stewart
Journal:  PLoS Genet       Date:  2009-11-13       Impact factor: 5.917

9.  A genome-wide screen for essential yeast genes that affect telomere length maintenance.

Authors:  Lior Ungar; Nir Yosef; Yael Sela; Roded Sharan; Eytan Ruppin; Martin Kupiec
Journal:  Nucleic Acids Res       Date:  2009-04-22       Impact factor: 16.971

10.  Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes.

Authors:  T Y Erkina; Y Zou; S Freeling; V I Vorobyev; A M Erkine
Journal:  Nucleic Acids Res       Date:  2009-12-16       Impact factor: 16.971
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