Literature DB >> 17392330

DPTF: a database of poplar transcription factors.

Qi-Hui Zhu1, An-Yuan Guo, Ge Gao, Ying-Fu Zhong, Meng Xu, Minren Huang, Jinchu Luo.   

Abstract

The database of poplar transcription factors (DPTF) is a plant transcription factor (TF) database containing 2576 putative poplar TFs distributed in 64 families. These TFs were identified from both computational prediction and manual curation. We have provided extensive annotations including sequence features, functional domains, GO assignment and expression evidence for all TFs. In addition, DPTF contains cross-links to the Arabidopsis and rice transcription factor databases making it a unique resource for genome-scale comparative studies of transcriptional regulation in model plants. Availiability: DPTF is available at http://dptf.cbi.pku.edu.cn.

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Year:  2007        PMID: 17392330     DOI: 10.1093/bioinformatics/btm113

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  47 in total

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Authors:  Francesca Secchi; Matthew E Gilbert; Maciej A Zwieniecki
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3.  Members of the LATERAL ORGAN BOUNDARIES DOMAIN transcription factor family are involved in the regulation of secondary growth in Populus.

Authors:  Yordan S Yordanov; Sharon Regan; Victor Busov
Journal:  Plant Cell       Date:  2010-11-19       Impact factor: 11.277

Review 4.  Genomics and bioinformatics resources for crop improvement.

Authors:  Keiichi Mochida; Kazuo Shinozaki
Journal:  Plant Cell Physiol       Date:  2010-03-05       Impact factor: 4.927

5.  Genomewide analysis of LATERAL ORGAN BOUNDARIES Domain gene family in Zea mays.

Authors:  Yue-Min Zhang; Shi-Zhong Zhang; Cheng-Chao Zheng
Journal:  J Genet       Date:  2014-04       Impact factor: 1.166

Review 6.  The potential of transcription factor-based genetic engineering in improving crop tolerance to drought.

Authors:  Roel C Rabara; Prateek Tripathi; Paul J Rushton
Journal:  OMICS       Date:  2014-08-13

7.  Genome-wide comparison of two poplar genotypes with different growth rates.

Authors:  Shuang Hao; Teng Zhao; Xinli Xia; Weilun Yin
Journal:  Plant Mol Biol       Date:  2011-05-26       Impact factor: 4.076

8.  Genomewide analysis of the lateral organ boundaries domain gene family in Vitis vinifera.

Authors:  Hui Cao; Cai-Yun Liu; Chun-Xiang Liu; Yue-Ling Zhao; Rui-Rui Xu
Journal:  J Genet       Date:  2016-09       Impact factor: 1.166

9.  Analysis of Brassica rapa ESTs: gene discovery and expression patterns of AP2/ERF family genes.

Authors:  Jing Zhuang; Ai-Sheng Xiong; Ri-He Peng; Feng Gao; Bo Zhu; Jian Zhang; Xiao-Yan Fu; Xiao-Feng Jin; Jian-Min Chen; Zhen Zhang; Yu-Shan Qiao; Quan-Hong Yao
Journal:  Mol Biol Rep       Date:  2009-08-23       Impact factor: 2.316

10.  A cross-species transcriptomics approach to identify genes involved in leaf development.

Authors:  Nathaniel Robert Street; Andreas Sjödin; Max Bylesjö; Petter Gustafsson; Johan Trygg; Stefan Jansson
Journal:  BMC Genomics       Date:  2008-12-05       Impact factor: 3.969

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