Literature DB >> 17392219

Phaeobacter daeponensis sp. nov., isolated from a tidal flat of the Yellow Sea in Korea.

Jung-Hoon Yoon1, So-Jung Kang1, Soo-Young Lee1, Tae-Kwang Oh1.   

Abstract

A Gram-negative, motile and egg-shaped bacterium, strain TF-218(T), was isolated from a tidal flat at Daepo Beach (Yellow Sea), Korea, and subjected to a polyphasic taxonomic analysis. Strain TF-218(T) grew optimally at pH 7.0-8.0 and 37 degrees C in the presence of 2 % (w/v) NaCl. It contained Q-10 as the predominant ubiquinone and C(18 : 1)omega7c and 11-methyl C(18 : 1)omega7c as the major fatty acids. The major polar lipids were phosphatidylcholine, phosphatidylglycerol, phosphatidylethanolamine, two unidentified lipids and an aminolipid. The DNA G+C content was 64.9 mol%. A neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that strain TF-218(T) is phylogenetically closely related to the genera Phaeobacter, Leisingera and Marinovum of the Alphaproteobacteria. The phylogenetic and chemotaxonomic similarities suggest that strain TF-218(T) represents a member of the genus Phaeobacter. DNA-DNA relatedness data and differential phenotypic properties, together with the phylogenetic distinctiveness, demonstrated that strain TF-218(T) differs from the recognized Phaeobacter species. On the basis of the phenotypic, chemotaxonomic and phylogenetic data, strain TF-218(T) represents a novel species of the genus Phaeobacter, for which the name Phaeobacter daeponensis sp. nov. is proposed. The type strain is TF-218(T) (=KCTC 12794(T)=JCM 13606(T)).

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Year:  2007        PMID: 17392219     DOI: 10.1099/ijs.0.64779-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  16 in total

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2.  Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade.

Authors:  Paul G Beyersmann; Olga Chertkov; Jörn Petersen; Anne Fiebig; Amy Chen; Amrita Pati; Natalia Ivanova; Alla Lapidus; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-07-30

3.  Aliisedimentitalea scapharcae gen. nov., sp. nov., isolated from ark shell Scapharca broughtonii.

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Journal:  J Microbiol       Date:  2015-07-31       Impact factor: 3.422

4.  Production of the antimicrobial secondary metabolite indigoidine contributes to competitive surface colonization by the marine roseobacter Phaeobacter sp. strain Y4I.

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5.  Genome sequence of the Leisingera aquimarina type strain (DSM 24565(T)), a member of the marine Roseobacter clade rich in extrachromosomal elements.

Authors:  Thomas Riedel; Hazuki Teshima; Jörn Petersen; Anne Fiebig; Karen Davenport; Hajnalka Daligault; Tracy Erkkila; Wei Gu; Christine Munk; Yan Xu; Amy Chen; Amrita Pati; Natalia Ivanova; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Markus Göker; Thorsten Brinkhoff; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2013-07-30

6.  Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

Authors:  Marco Dogs; Hazuki Teshima; Jörn Petersen; Anne Fiebig; Olga Chertkov; Hajnalka Dalingault; Amy Chen; Amrita Pati; Lynne A Goodwin; Patrick Chain; John C Detter; Natalia Ivanova; Alla Lapidus; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Meinhard Simon; Markus Göker; Hans-Peter Klenk; Thorsten Brinkhoff
Journal:  Stand Genomic Sci       Date:  2013-10-03

7.  Characterization of intestinal bacteria in wild and domesticated adult black tiger shrimp (Penaeus monodon).

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8.  Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566(T.).

Authors:  Heike M Freese; Hajnalka Dalingault; Jörn Petersen; Silke Pradella; Karen Davenport; Hazuki Teshima; Amy Chen; Amrita Pati; Natalia Ivanova; Lynne A Goodwin; Patrick Chain; John C Detter; Manfred Rohde; Sabine Gronow; Nikos C Kyrpides; Tanja Woyke; Thorsten Brinkhoff; Markus Göker; Jörg Overmann; Hans-Peter Klenk
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9.  Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin.

Authors:  John Vollmers; Sonja Voget; Sascha Dietrich; Kathleen Gollnow; Maike Smits; Katja Meyer; Thorsten Brinkhoff; Meinhard Simon; Rolf Daniel
Journal:  PLoS One       Date:  2013-05-06       Impact factor: 3.240

10.  Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395.

Authors:  Emie Durighello; Joseph Alexander Christie-Oleza; Jean Armengaud
Journal:  PLoS One       Date:  2014-02-24       Impact factor: 3.240

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