Literature DB >> 17392212

Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999.

Hana Yi1, Young Woon Lim2, Jongsik Chun2,1.   

Abstract

The taxonomic positions of the genera Ruegeria and Silicibacter were evaluated by a polyphasic investigation. It was evident from 16S rRNA gene sequence analysis that both genera are closely related as they formed a monophyletic clade with high sequence similarities (96.9-98.2 %). Several properties commonly found in these taxa strongly suggest that they should be classified in the same genus. Further, a comparative study based on DNA-DNA hybridization, phenotypic characterization and chemotaxonomic analysis indicated that the members of this clade, namely Ruegeria atlantica, Silicibacter lacuscaerulensis and Silicibacter pomeroyi, can be readily differentiated from each other. On the basis of the polyphasic data obtained in this study, all species of the genus Silicibacter should be transferred to the genus Ruegeria, since the latter has nomenclatural priority. It is therefore proposed that Silicibacter lacuscaerulensis and Silicibacter pomeroyi are transferred to the genus Ruegeria as Ruegeria lacuscaerulensis comb. nov. and Ruegeria pomeroyi comb. nov.

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Year:  2007        PMID: 17392212     DOI: 10.1099/ijs.0.64568-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  12 in total

Review 1.  Interactions between diatoms and bacteria.

Authors:  Shady A Amin; Micaela S Parker; E Virginia Armbrust
Journal:  Microbiol Mol Biol Rev       Date:  2012-09       Impact factor: 11.056

2.  Regulatory and functional diversity of methylmercaptopropionate coenzyme A ligases from the dimethylsulfoniopropionate demethylation pathway in Ruegeria pomeroyi DSS-3 and other proteobacteria.

Authors:  Hannah A Bullock; Chris R Reisch; Andrew S Burns; Mary Ann Moran; William B Whitman
Journal:  J Bacteriol       Date:  2014-01-17       Impact factor: 3.490

3.  Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide.

Authors:  Chun-Yang Li; Tian-Di Wei; Sheng-Hui Zhang; Xiu-Lan Chen; Xiang Gao; Peng Wang; Bin-Bin Xie; Hai-Nan Su; Qi-Long Qin; Xi-Ying Zhang; Juan Yu; Hong-Hai Zhang; Bai-Cheng Zhou; Gui-Peng Yang; Yu-Zhong Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

4.  Expression of tropodithietic acid biosynthesis is controlled by a novel autoinducer.

Authors:  Haifeng Geng; Robert Belas
Journal:  J Bacteriol       Date:  2010-07-02       Impact factor: 3.490

5.  Ruegeria haliotis sp. nov., Isolated from the Gut of the Abalone Haliotis rubra.

Authors:  Wen-Rui Cao; Dan-Dan Shang; Bang-Tao Liu; Yi-Hao Hu; Xun-Ke Sun; Yuan-Yuan Sun; Ming-Yu Jiang; Zong-Jun Du
Journal:  Curr Microbiol       Date:  2021-04-01       Impact factor: 2.188

6.  Ruegeria alba sp. nov., Isolated from a Tidal Flat Sediment.

Authors:  Juan Du; Yang Liu; Tao Pei; Anzhang Li; Honghui Zhu
Journal:  Curr Microbiol       Date:  2022-07-26       Impact factor: 2.343

7.  In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.

Authors:  Joseph Alexander Christie-Oleza; Jean Armengaud
Journal:  Mar Drugs       Date:  2010-07-29       Impact factor: 5.118

8.  Bifurcated degradative pathway of 3-sulfolactate in Roseovarius nubinhibens ISM via sulfoacetaldehyde acetyltransferase and (S)-cysteate sulfolyase.

Authors:  Karin Denger; Jutta Mayer; Matthias Buhmann; Sonja Weinitschke; Theo H M Smits; Alasdair M Cook
Journal:  J Bacteriol       Date:  2009-07-06       Impact factor: 3.490

9.  A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.

Authors:  Karin Schwibbert; Alberto Marin-Sanguino; Irina Bagyan; Gabriele Heidrich; Georg Lentzen; Harald Seitz; Markus Rampp; Stephan C Schuster; Hans-Peter Klenk; Friedhelm Pfeiffer; Dieter Oesterhelt; Hans Jörg Kunte
Journal:  Environ Microbiol       Date:  2010-09-16       Impact factor: 5.491

10.  An Updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.

Authors:  Adam R Rivers; Christa B Smith; Mary Ann Moran
Journal:  Stand Genomic Sci       Date:  2014-12-08
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