Literature DB >> 17388581

Estimation on the individual hydrogen-bond strength in molecules with multiple hydrogen bonds.

Hao Dong1, Weijie Hua, Shuhua Li.   

Abstract

A simple atom-replacement approach is proposed for estimating the individual contributions of each intermolecular hydrogen bond (HB) in multiple hydrogen-bonded systems. The approach is validated by calculations on the homodimer of formylformamide and then applied to nucleic acid base pairs (adenine-thymine and guanine-cytosine) and some quadruply hydrogen-bonded dimers. With the help of this method, it is easy to distinguish the relative strength of each HB, and identify the main factors contributing to the total binding energies of multiple HBs.

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Year:  2007        PMID: 17388581     DOI: 10.1021/jp0709860

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  4 in total

1.  The effect of CH3, F and NO2 substituents on the individual hydrogen bond energies in the adenine-thymine and guanine-cytosine base pairs.

Authors:  A Ebrahimi; S M Habibi Khorassani; H Delarami; H Esmaeeli
Journal:  J Comput Aided Mol Des       Date:  2010-03-30       Impact factor: 3.686

2.  Estimating Strengths of Individual Hydrogen Bonds in RNA Base Pairs: Toward a Consensus between Different Computational Approaches.

Authors:  Antarip Halder; Dhruv Data; Preethi P Seelam; Dhananjay Bhattacharyya; Abhijit Mitra
Journal:  ACS Omega       Date:  2019-04-23

3.  Mutual Relations between Substituent Effect, Hydrogen Bonding, and Aromaticity in Adenine-Uracil and Adenine-Adenine Base Pairs.

Authors:  Paweł A Wieczorkiewicz; Halina Szatylowicz; Tadeusz M Krygowski
Journal:  Molecules       Date:  2020-08-13       Impact factor: 4.411

4.  The Influence of (5'R)- and (5'S)-5',8-Cyclo-2'-Deoxyadenosine on UDG and hAPE1 Activity. Tandem Lesions are the Base Excision Repair System's Nightmare.

Authors:  Bolesław T Karwowski
Journal:  Cells       Date:  2019-10-23       Impact factor: 6.600

  4 in total

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