Literature DB >> 17388481

Measuring coexisting densities from a two-phase molecular dynamics simulation by voronoi tessellations.

Jared T Fern1, David J Keffer, William V Steele.   

Abstract

A new algorithm is presented that allows for the determination of bulk liquid and vapor densities from a two-phase Molecular Dynamics (2phiMD) simulation. This new method does not use any arbitrary cutoffs for phase definitions; rather it uses single-phase simulations as a self-consistency check. The method does not use any spatial bins for generating histograms of local properties, thereby avoiding the statistical issues associated with bins. Finally, it allows one to approach very close to the critical point. The new method utilizes Voronoi tessellations to determine the molecular volume of every point at every instance in a molecular dynamics simulation. Since the molecular volume is calculated throughout the simulation, statistical parameters such as the average molecular volume and average molecular variance are easy to obtain. To define the phases, the normalized variance of the molecular volume from 1phiMD and 2phiMD is used as a self-consistency check. The new method gives new insight into the nature of the near-subcritical fluid. The critical properties from this analysis are T(c) = 1.293 and rho(c) = 0.313. Direct simulation of the two-phase system was performed up to a temperature of 1.292. The results show excellent agreement to experimental results and Gibbs Ensemble Monte Carlo for coexisting densities. We see that well below the critical temperature, some particles are neither liquid nor vapor. These interfacial particles are primarily, but not exclusively, concentrated at the bulk interface. However, as we approach the critical point, some particles are considered both liquid and vapor. These interfacial particles are distributed through the system.

Year:  2007        PMID: 17388481     DOI: 10.1021/jp0674470

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  2 in total

1.  Pore diameter effects on phase behavior of a gas condensate in graphitic one-and two-dimensional nanopores.

Authors:  William R W Welch; Mohammad Piri
Journal:  J Mol Model       Date:  2016-01-05       Impact factor: 1.810

2.  Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes.

Authors:  Jacek Dygut; Barbara Kalinowska; Mateusz Banach; Monika Piwowar; Leszek Konieczny; Irena Roterman
Journal:  Int J Mol Sci       Date:  2016-10-18       Impact factor: 5.923

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.