Literature DB >> 17385861

Highly populated turn conformations in natively unfolded tau protein identified from residual dipolar couplings and molecular simulation.

Marco D Mukrasch1, Phineus Markwick, Jacek Biernat, Martin von Bergen, Pau Bernadó, Christian Griesinger, Eckhard Mandelkow, Markus Zweckstetter, Martin Blackledge.   

Abstract

Tau, a natively unstructured protein that regulates the organization of neuronal microtubules, is also found in high concentrations in neurofibrillary tangles of Alzheimer's disease and other neurodegenerative disorders. The conformational transition between these vastly different healthy and pathological forms remains poorly understood. We have measured residual dipolar couplings (RDCs), J-couplings, and nuclear Overhauser enhancement (NOE) in construct K18 of tau, containing all four repeat domains R1-R4. NHN RDCs were compared with prediction on the basis of a statistical model describing the intrinsic conformational sampling of unfolded proteins in solution. While local variation and relative amplitude of RDCs agrees with propensity-based prediction for most of the protein, homologous sequences in each repeat domain (DLKN, DLSN, DLSK, and DKFD in repeats R1-R4) show strong disagreement characterized by inversion of the sign of the central couplings. Accelerated molecular dynamic simulations (AMD) in explicit solvent revealed strong tendencies to form turns, identified as type I beta-turns for repeats R1-R3. Incorporation of the backbone dihedral sampling resulting from AMD into the statistical coil model closely reproduces experimental RDC values. These localized sequence-dependent conformational tendencies interrupt the propensity to sample more extended conformations in adjacent strands and are remarkably resistant to local environmental factors, as demonstrated by the persistence of the RDC signature even under harsh denaturing conditions (8 M urea). The role that this specific conformational behavior may play in the transition to the pathological form is discussed.

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Year:  2007        PMID: 17385861     DOI: 10.1021/ja0690159

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  64 in total

1.  Multiscale ensemble modeling of intrinsically disordered proteins: p53 N-terminal domain.

Authors:  Tsuyoshi Terakawa; Shoji Takada
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

2.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

3.  Interconnection of salt-induced hydrophobic compaction and secondary structure formation depends on solution conditions: revisiting early events of protein folding at single molecule resolution.

Authors:  Shubhasis Haldar; Krishnananda Chattopadhyay
Journal:  J Biol Chem       Date:  2012-02-02       Impact factor: 5.157

Review 4.  14-3-3/Tau Interaction and Tau Amyloidogenesis.

Authors:  Yuwen Chen; Xingyu Chen; Zhiyang Yao; Yuqi Shi; Junwen Xiong; Jingjing Zhou; Zhengding Su; Yongqi Huang
Journal:  J Mol Neurosci       Date:  2019-05-06       Impact factor: 3.444

5.  Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain.

Authors:  Mark Wells; Henning Tidow; Trevor J Rutherford; Phineus Markwick; Malene Ringkjobing Jensen; Efstratios Mylonas; Dmitri I Svergun; Martin Blackledge; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

6.  A self-consistent description of the conformational behavior of chemically denatured proteins from NMR and small angle scattering.

Authors:  Pau Bernadó; Martin Blackledge
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

7.  Accelerating chemical reactions: exploring reactive free-energy surfaces using accelerated ab initio molecular dynamics.

Authors:  Levi C T Pierce; Phineus R L Markwick; J Andrew McCammon; Nikos L Doltsinis
Journal:  J Chem Phys       Date:  2011-05-07       Impact factor: 3.488

8.  Competing interactions stabilize pro- and anti-aggregant conformations of human Tau.

Authors:  Susanne Wegmann; Jonas Schöler; Christian A Bippes; Eckhard Mandelkow; Daniel J Muller
Journal:  J Biol Chem       Date:  2011-04-15       Impact factor: 5.157

9.  Intrinsic disorder in measles virus nucleocapsids.

Authors:  Malene Ringkjøbing Jensen; Guillaume Communie; Euripedes Almeida Ribeiro; Nicolas Martinez; Ambroise Desfosses; Loïc Salmon; Luca Mollica; Frank Gabel; Marc Jamin; Sonia Longhi; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-25       Impact factor: 11.205

Review 10.  A flash in the pan: dissecting dynamic amyloid intermediates using fluorescence.

Authors:  Abhinav Nath; Elizabeth Rhoades
Journal:  FEBS Lett       Date:  2013-03-01       Impact factor: 4.124

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