Literature DB >> 17385847

Looking at self-consistent-charge density functional tight binding from a semiempirical perspective.

Nikolaj Otte1, Mirjam Scholten, Walter Thiel.   

Abstract

The self-consistent-charge density functional tight binding (SCC-DFTB) method is compared with other semiempirical methods (MNDO, AM1, PM3, OM1, OM2, OM3). Despite the differences in the underlying philosophy and derivation, these methods share many common features. Systematic evaluations of their performance are reported for standard test sets that are in common use. The overall accuracy of SCC-DFTB and the other methods is in the same range, with the overall tendency AM1<SCC-DFTB<OM2, but any such ranking depends on the properties and compound classes considered. SCC-DFTB is excellent for geometries and performs well for biological systems. It seems less suitable for the energetics of radicals and electronically excited states, and suffers from occasional outliers (e.g., for compounds with NO bonds). In an overall assessment, SCC-DFTB is a viable semiempirical method with specific strengths and weaknesses which may be an attractive choice especially for biomolecular applications.

Entities:  

Year:  2007        PMID: 17385847     DOI: 10.1021/jp0700130

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  25 in total

1.  Density-functional expansion methods: generalization of the auxiliary basis.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2011-05-21       Impact factor: 3.488

2.  Nucleic acid reactivity: challenges for next-generation semiempirical quantum models.

Authors:  Ming Huang; Timothy J Giese; Darrin M York
Journal:  J Comput Chem       Date:  2015-05-06       Impact factor: 3.376

3.  Exploring the applicability of density functional tight binding to transition metal ions. Parameterization for nickel with the spin-polarized DFTB3 model.

Authors:  Milena Vujović; Mioy Huynh; Sebastian Steiner; Pablo Garcia-Fernandez; Marcus Elstner; Qiang Cui; Maja Gruden
Journal:  J Comput Chem       Date:  2018-10-09       Impact factor: 3.376

Review 4.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

5.  A modified QM/MM Hamiltonian with the Self-Consistent-Charge Density-Functional-Tight-Binding Theory for highly charged QM regions.

Authors:  Guanhua Hou; Xiao Zhu; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2012-11-13       Impact factor: 6.006

6.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

7.  Application of a SCC-DFTB QM/MM approach to the investigation of the catalytic mechanism of fatty acid amide hydrolase.

Authors:  Luigi Capoferri; Marco Mor; Jitnapa Sirirak; Ewa Chudyk; Adrian J Mulholland; Alessio Lodola
Journal:  J Mol Model       Date:  2011-03-02       Impact factor: 1.810

8.  Catalysis of carboxypeptidase A: promoted-water versus nucleophilic pathways.

Authors:  Shanshan Wu; Chunchun Zhang; Dingguo Xu; Hua Guo
Journal:  J Phys Chem B       Date:  2010-07-22       Impact factor: 2.991

9.  Description of phosphate hydrolysis reactions with the Self-Consistent-Charge Density-Functional-Tight-Binding (SCC-DFTB) theory. 1. Parameterization.

Authors:  Yang Yang; Haibo Yu; Darrin York; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2008       Impact factor: 6.006

10.  DFTB3: Extension of the self-consistent-charge density-functional tight-binding method (SCC-DFTB).

Authors:  Michael Gaus; Qiang Cui; Marcus Elstner
Journal:  J Chem Theory Comput       Date:  2012-04-10       Impact factor: 6.006

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