Roman A Laskowski1. 1. European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. roman@ebi.ac.uk
Abstract
MOTIVATION: The Protein Data Bank (PDB) contains over 43,800 experimentally determined 3D models of macromolecular structures and their complexes. Each 3D model reveals something interesting and important about the given molecule's function and biological significance. Usually the best source of this information is the original article describing it, and it is often possible to discern the key aspects of the structure from just one or two of the figures in that article. RESULTS: Here we describe how, with the permission of the journals and their publishers, we have endeavoured to make these key figures publicly available to enhance the functional information relating to each PDB entry in our PDBsum database. AVAILABILITY: http://www.ebi.ac.uk/pdbsum.
MOTIVATION: The Protein Data Bank (PDB) contains over 43,800 experimentally determined 3D models of macromolecular structures and their complexes. Each 3D model reveals something interesting and important about the given molecule's function and biological significance. Usually the best source of this information is the original article describing it, and it is often possible to discern the key aspects of the structure from just one or two of the figures in that article. RESULTS: Here we describe how, with the permission of the journals and their publishers, we have endeavoured to make these key figures publicly available to enhance the functional information relating to each PDB entry in our PDBsum database. AVAILABILITY: http://www.ebi.ac.uk/pdbsum.
Authors: Srirupa Chatterjee; Priya Luthra; Ekaterina Esaulova; Eugene Agapov; Benjamin C Yen; Dominika M Borek; Megan R Edwards; Anuradha Mittal; David S Jordan; Parameshwar Ramanan; Martin L Moore; Rohit V Pappu; Michael J Holtzman; Maxim N Artyomov; Christopher F Basler; Gaya K Amarasinghe; Daisy W Leung Journal: Nat Microbiol Date: 2017-06-30 Impact factor: 17.745
Authors: Wei Xu; Megan R Edwards; Dominika M Borek; Alicia R Feagins; Anuradha Mittal; Joshua B Alinger; Kayla N Berry; Benjamin Yen; Jennifer Hamilton; Tom J Brett; Rohit V Pappu; Daisy W Leung; Christopher F Basler; Gaya K Amarasinghe Journal: Cell Host Microbe Date: 2014-08-13 Impact factor: 21.023
Authors: Sangwon Lee; Etienne B Greenlee; Joseph R Amick; Gwenda F Ligon; Jay S Lillquist; Edward J Natoli; Yaron Hadari; Diego Alvarado; Joseph Schlessinger Journal: Proc Natl Acad Sci U S A Date: 2015-10-12 Impact factor: 11.205
Authors: Andreas Prlić; Marco A Martinez; Dimitris Dimitropoulos; Bojan Beran; Benjamin T Yukich; Peter W Rose; Philip E Bourne; J Lynn Fink Journal: BMC Bioinformatics Date: 2010-04-29 Impact factor: 3.169