Literature DB >> 17384236

Structural characterization of the fusion of two pentapeptide repeat proteins, Np275 and Np276, from Nostoc punctiforme: resurrection of an ancestral protein.

Matthew W Vetting1, Subray S Hegde, Keith Z Hazleton, John S Blanchard.   

Abstract

The Nostoc punctiforme genes Np275 and Np276 are two adjacently encoded proteins of 98 and 75 amino acids in length and exhibit sequences composed of tandem pentapeptide repeats. The structures of Np275 and a fusion of Np275 and Np276 were determined to 2.1 and 1.5 A, respectively. The two Nostoc proteins fold as highly symmetric right-handed quadrilateral beta-helices similar to the mycobacterial protein MfpA implicated in fluoroquinolone resistance and DNA gyrase inhibition. The sequence composition of the intervening coding region and the ability to express a fused protein by removing the stop codon for Np275 suggests Np275 and Np276 were recently part of a larger ancestral pentapeptide repeat protein.

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Year:  2007        PMID: 17384236      PMCID: PMC2203339          DOI: 10.1110/ps.062637707

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  15 in total

Review 1.  Genetics of ribosomally synthesized peptide antibiotics.

Authors:  R Kolter; F Moreno
Journal:  Annu Rev Microbiol       Date:  1992       Impact factor: 15.500

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3.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-07-01

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Authors:  John H Tran; George A Jacoby; David C Hooper
Journal:  Antimicrob Agents Chemother       Date:  2005-01       Impact factor: 5.191

5.  Structure and distribution of pentapeptide repeats in bacteria.

Authors:  A Bateman; A G Murzin; S A Teichmann
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

6.  Sequence features surrounding the translation initiation sites assigned on the genome sequence of Synechocystis sp. strain PCC6803 by amino-terminal protein sequencing.

Authors:  T Sazuka; O Ohara
Journal:  DNA Res       Date:  1996-08-31       Impact factor: 4.458

7.  An overview of the genome of Nostoc punctiforme, a multicellular, symbiotic cyanobacterium.

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Journal:  Photosynth Res       Date:  2001       Impact factor: 3.573

8.  Regulation of manganese uptake in Synechocystis 6803 by RfrA, a member of a novel family of proteins containing a repeated five-residues domain.

Authors:  Leeann E Chandler; Victor V Bartsevich; Himadri B Pakrasi
Journal:  Biochemistry       Date:  2003-05-13       Impact factor: 3.162

Review 9.  The integration of macromolecular diffraction data.

Authors:  Andrew G W Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14

10.  Predicting Shine-Dalgarno sequence locations exposes genome annotation errors.

Authors:  J Starmer; A Stomp; M Vouk; D Bitzer
Journal:  PLoS Comput Biol       Date:  2006-05-19       Impact factor: 4.475

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  10 in total

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Authors:  Leonor García-Bayona; Kevin Gozzi; Michael T Laub
Journal:  J Bacteriol       Date:  2019-03-26       Impact factor: 3.490

2.  Structure of QnrB1, a plasmid-mediated fluoroquinolone resistance factor.

Authors:  Matthew W Vetting; Subray S Hegde; Minghua Wang; George A Jacoby; David C Hooper; John S Blanchard
Journal:  J Biol Chem       Date:  2011-05-19       Impact factor: 5.157

3.  Pentapeptide-repeat proteins that act as topoisomerase poison resistance factors have a common dimer interface.

Authors:  Matthew W Vetting; Subray S Hegde; Yong Zhang; John S Blanchard
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-02-18

4.  Structural insights into quinolone antibiotic resistance mediated by pentapeptide repeat proteins: conserved surface loops direct the activity of a Qnr protein from a gram-negative bacterium.

Authors:  Xiaoli Xiong; Elizabeth H C Bromley; Peter Oelschlaeger; Derek N Woolfson; James Spencer
Journal:  Nucleic Acids Res       Date:  2011-01-11       Impact factor: 16.971

5.  Detecting internally symmetric protein structures.

Authors:  Changhoon Kim; Jodi Basner; Byungkook Lee
Journal:  BMC Bioinformatics       Date:  2010-06-03       Impact factor: 3.169

6.  Post-translational insertion of boron in proteins to probe and modulate function.

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Journal:  Nat Chem Biol       Date:  2021-11-01       Impact factor: 15.040

Review 7.  Current Understanding of the Structure and Function of Pentapeptide Repeat Proteins.

Authors:  Ruojing Zhang; Michael A Kennedy
Journal:  Biomolecules       Date:  2021-04-26

8.  A mutational analysis and molecular dynamics simulation of quinolone resistance proteins QnrA1 and QnrC from Proteus mirabilis.

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Journal:  BMC Struct Biol       Date:  2010-10-08

9.  Rapid cross-metathesis for reversible protein modifications via chemical access to Se-allyl-selenocysteine in proteins.

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Journal:  J Am Chem Soc       Date:  2013-08-08       Impact factor: 15.419

10.  Type I beta turns make a new twist in pentapeptide repeat proteins: Crystal structure of Alr5209 from Nostoc sp. PCC 7120 determined at 1.7 angström resolution.

Authors:  Ruojing Zhang; Shuisong Ni; Michael A Kennedy
Journal:  J Struct Biol X       Date:  2019-08-14
  10 in total

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