Literature DB >> 17384020

IlluminaGUI: graphical user interface for analyzing gene expression data generated on the Illumina platform.

Joachim L Schultze1, Daniela Eggle.   

Abstract

UNLABELLED: IlluminaGUI is a graphical user interface implemented for analyzing microarray data from the Illumina BeadChip platform. All key components of a microarray experiment, including quality control, normalization, inference and classification methods are provided in a 'point and click' approach. IlluminaGUI is implemented as a R package based on the R-Tcl/Tk interface and is available for platforms on which R runs including Windows, Mac and Unix-type machines. AVAILABILITY: http://IlluminaGUI.dnsalias.org

Mesh：

Year:  2007        PMID： 17384020     DOI： 10.1093/bioinformatics/btm101

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

1.  RNA-stabilized whole blood samples but not peripheral blood mononuclear cells can be stored for prolonged time periods prior to transcriptome analysis.

Authors:  Svenja Debey-Pascher; Andrea Hofmann; Fatima Kreusch; Gerold Schuler; Beatrice Schuler-Thurner; Joachim L Schultze; Andrea Staratschek-Jox
Journal:  J Mol Diagn       Date:  2011-07       Impact factor: 5.568

2.  Cancer cell-autonomous contribution of type I interferon signaling to the efficacy of chemotherapy.

Authors:  Antonella Sistigu; Takahiro Yamazaki; Erika Vacchelli; Kariman Chaba; David P Enot; Julien Adam; Ilio Vitale; Aicha Goubar; Elisa E Baracco; Catarina Remédios; Laetitia Fend; Dalil Hannani; Laetitia Aymeric; Yuting Ma; Mireia Niso-Santano; Oliver Kepp; Joachim L Schultze; Thomas Tüting; Filippo Belardelli; Laura Bracci; Valentina La Sorsa; Giovanna Ziccheddu; Paola Sestili; Francesca Urbani; Mauro Delorenzi; Magali Lacroix-Triki; Virginie Quidville; Rosa Conforti; Jean-Philippe Spano; Lajos Pusztai; Vichnou Poirier-Colame; Suzette Delaloge; Frederique Penault-Llorca; Sylvain Ladoire; Laurent Arnould; Joanna Cyrta; Marie-Charlotte Dessoliers; Alexander Eggermont; Marco E Bianchi; Mikael Pittet; Camilla Engblom; Christina Pfirschke; Xavier Préville; Gilles Uzè; Robert D Schreiber; Melvyn T Chow; Mark J Smyth; Enrico Proietti; Fabrice André; Guido Kroemer; Laurence Zitvogel
Journal:  Nat Med       Date:  2014-10-26       Impact factor: 53.440

3.  Identification of epigenetically regulated genes that predict patient outcome in neuroblastoma.

Authors:  Helena Carén; Anna Djos; Maria Nethander; Rose-Marie Sjöberg; Per Kogner; Camilla Enström; Staffan Nilsson; Tommy Martinsson
Journal:  BMC Cancer       Date:  2011-02-11       Impact factor: 4.430

4.  Csf2 null mutation alters placental gene expression and trophoblast glycogen cell and giant cell abundance in mice.

Authors:  Amanda N Sferruzzi-Perri; Anne M Macpherson; Claire T Roberts; Sarah A Robertson
Journal:  Biol Reprod       Date:  2009-02-18       Impact factor: 4.285

5.  A user-friendly workflow for analysis of Illumina gene expression bead array data available at the arrayanalysis.org portal.

Authors:  Lars M T Eijssen; Varshna S Goelela; Thomas Kelder; Michiel E Adriaens; Chris T Evelo; Marijana Radonjic
Journal:  BMC Genomics       Date:  2015-06-30       Impact factor: 3.969

6.  Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

Authors:  Aristotelis Chatziioannou; Panagiotis Moulos; Fragiskos N Kolisis
Journal:  BMC Bioinformatics       Date:  2009-10-27       Impact factor: 3.169

7.  The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Authors:  Frédéric Chalmel; Michael Primig
Journal:  BMC Bioinformatics       Date:  2008-02-06       Impact factor: 3.169
  7 in total

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