Literature DB >> 17381081

Exhaustive QSPR studies of a large diverse set of ionic liquids: how accurately can we predict melting points?

Alexandre Varnek1, Natalia Kireeva, Igor V Tetko, Igor I Baskin, Vitaly P Solov'ev.   

Abstract

Several popular machine learning methods--Associative Neural Networks (ANN), Support Vector Machines (SVM), k Nearest Neighbors (kNN), modified version of the partial least-squares analysis (PLSM), backpropagation neural network (BPNN), and Multiple Linear Regression Analysis (MLR)--implemented in ISIDA, NASAWIN, and VCCLAB software have been used to perform QSPR modeling of melting point of structurally diverse data set of 717 bromides of nitrogen-containing organic cations (FULL) including 126 pyridinium bromides (PYR), 384 imidazolium and benzoimidazolium bromides (IMZ), and 207 quaternary ammonium bromides (QUAT). Several types of descriptors were tested: E-state indices, counts of atoms determined for E-state atom types, molecular descriptors generated by the DRAGON program, and different types of substructural molecular fragments. Predictive ability of the models was analyzed using a 5-fold external cross-validation procedure in which every compound in the parent set was included in one of five test sets. Among the 16 types of developed structure--melting point models, nonlinear SVM, ASNN, and BPNN techniques demonstrate slightly better performance over other methods. For the full set, the accuracy of predictions does not significantly change as a function of the type of descriptors. For other sets, the performance of descriptors varies as a function of method and data set used. The root-mean squared error (RMSE) of prediction calculated on independent test sets is in the range of 37.5-46.4 degrees C (FULL), 26.2-34.8 degrees C (PYR), 38.8-45.9 degrees C (IMZ), and 34.2-49.3 degrees C (QUAT). The moderate accuracy of predictions can be related to the quality of the experimental data used for obtaining the models as well as to difficulties to take into account the structural features of ionic liquids in the solid state (polymorphic effects, eutectics, glass formation).

Year:  2007        PMID: 17381081     DOI: 10.1021/ci600493x

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  7 in total

1.  Beware of R(2): Simple, Unambiguous Assessment of the Prediction Accuracy of QSAR and QSPR Models.

Authors:  D L J Alexander; A Tropsha; David A Winkler
Journal:  J Chem Inf Model       Date:  2015-07-09       Impact factor: 4.956

Review 2.  Advances in QSPR/QSTR models of ionic liquids for the design of greener solvents of the future.

Authors:  Rudra Narayan Das; Kunal Roy
Journal:  Mol Divers       Date:  2013-01-17       Impact factor: 2.943

3.  QSPR ensemble modelling of the 1:1 and 1:2 complexation of Co²⁺, Ni²⁺, and Cu²⁺ with organic ligands: relationships between stability constants.

Authors:  Vitaly Solov'ev; Alexandre Varnek; Aslan Tsivadze
Journal:  J Comput Aided Mol Des       Date:  2014-04-16       Impact factor: 3.686

4.  Predicting Thermal Decomposition Temperature of Binary Imidazolium Ionic Liquid Mixtures from Molecular Structures.

Authors:  Hongpeng He; Yong Pan; Jianwen Meng; Yongheng Li; Junhong Zhong; Weijia Duan; Juncheng Jiang
Journal:  ACS Omega       Date:  2021-05-11

Review 5.  Comparison and enumeration of chemical graphs.

Authors:  Tatsuya Akutsu; Hiroshi Nagamochi
Journal:  Comput Struct Biotechnol J       Date:  2013-02-26       Impact factor: 7.271

6.  The development of models to predict melting and pyrolysis point data associated with several hundred thousand compounds mined from PATENTS.

Authors:  Igor V Tetko; Daniel M Lowe; Antony J Williams
Journal:  J Cheminform       Date:  2016-01-22       Impact factor: 5.514

7.  How accurately can we predict the melting points of drug-like compounds?

Authors:  Igor V Tetko; Yurii Sushko; Sergii Novotarskyi; Luc Patiny; Ivan Kondratov; Alexander E Petrenko; Larisa Charochkina; Abdullah M Asiri
Journal:  J Chem Inf Model       Date:  2014-12-09       Impact factor: 4.956

  7 in total

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