Literature DB >> 17367127

Estimation of Kováts retention indices using group contributions.

Stephen E Stein1, Valeri I Babushok, Robert L Brown, Peter J Linstrom.   

Abstract

We have constructed a group contribution method for estimating Kováts retention indices by using observed data from a set of diverse organic compounds. Our database contains observed retention indices for over 35,000 different molecules. These were measured on capillary or packed columns with polar and nonpolar (or slightly polar) stationary phases under isothermal or nonisothermal conditions. We neglected any dependence of index values on these factors by averaging observations. Using 84 groups, we determined two sets of increment values, one for nonpolar and the other for polar column data. For nonpolar column data, the median absolute prediction error was 46 (3.2%). For data on polar columns, the median absolute error was 65 (3.9%). While accuracy is insufficient for identification based solely on retention, it is suitable for the rejection of certain classes of false identifications made by gas chromatography/mass spectrometry.

Year:  2007        PMID: 17367127     DOI: 10.1021/ci600548y

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  14 in total

1.  A large scale test dataset to determine optimal retention index threshold based on three mass spectral similarity measures.

Authors:  Jun Zhang; Imhoi Koo; Bing Wang; Qing-Wei Gao; Chun-Hou Zheng; Xiang Zhang
Journal:  J Chromatogr A       Date:  2012-06-19       Impact factor: 4.759

2.  iMatch: a retention index tool for analysis of gas chromatography-mass spectrometry data.

Authors:  Jun Zhang; Aiqin Fang; Bing Wang; Seong Ho Kim; Bogdan Bogdanov; Zhanxiang Zhou; Craig McClain; Xiang Zhang
Journal:  J Chromatogr A       Date:  2011-07-23       Impact factor: 4.759

Review 3.  Challenges in Identifying the Dark Molecules of Life.

Authors:  María Eugenia Monge; James N Dodds; Erin S Baker; Arthur S Edison; Facundo M Fernández
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2019-03-18       Impact factor: 10.745

4.  Applying in-silico retention index and mass spectra matching for identification of unknown metabolites in accurate mass GC-TOF mass spectrometry.

Authors:  Sangeeta Kumari; Doug Stevens; Tobias Kind; Carsten Denkert; Oliver Fiehn
Journal:  Anal Chem       Date:  2011-06-28       Impact factor: 6.986

5.  Use of Partition Coefficients in a Hexane-Acetonitrile System in the GC-MS Analysis of Polyaromatic Hydrocarbons in the Example of Delayed Coking Gas Oils.

Authors:  Ignaty Efimov; Vladimir Glebovich Povarov; Viacheslav A Rudko
Journal:  ACS Omega       Date:  2021-03-31

6.  FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry.

Authors:  Tobias Kind; Gert Wohlgemuth; Do Yup Lee; Yun Lu; Mine Palazoglu; Sevini Shahbaz; Oliver Fiehn
Journal:  Anal Chem       Date:  2009-12-15       Impact factor: 6.986

7.  An Antifungal Benzimidazole Derivative Inhibits Ergosterol Biosynthesis and Reveals Novel Sterols.

Authors:  Petra Keller; Christoph Müller; Isabel Engelhardt; Ekkehard Hiller; Karin Lemuth; Holger Eickhoff; Karl-Heinz Wiesmüller; Anke Burger-Kentischer; Franz Bracher; Steffen Rupp
Journal:  Antimicrob Agents Chemother       Date:  2015-07-27       Impact factor: 5.191

8.  Advances in structure elucidation of small molecules using mass spectrometry.

Authors:  Tobias Kind; Oliver Fiehn
Journal:  Bioanal Rev       Date:  2010-08-21

9.  Computational mass spectrometry for small molecules.

Authors:  Kerstin Scheubert; Franziska Hufsky; Sebastian Böcker
Journal:  J Cheminform       Date:  2013-03-01       Impact factor: 5.514

10.  MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics.

Authors:  James G Jeffryes; Ricardo L Colastani; Mona Elbadawi-Sidhu; Tobias Kind; Thomas D Niehaus; Linda J Broadbelt; Andrew D Hanson; Oliver Fiehn; Keith E J Tyo; Christopher S Henry
Journal:  J Cheminform       Date:  2015-08-28       Impact factor: 5.514

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