Literature DB >> 17366144

Opinions on multiple sequence alignment, and an empirical comparison of repeatability and accuracy between POY and structural alignment.

Karl M Kjer1, Joseph J Gillespie, Karen A Ober.   

Abstract

Mesh:

Year:  2007        PMID: 17366144     DOI: 10.1080/10635150601156305

Source DB:  PubMed          Journal:  Syst Biol        ISSN: 1063-5157            Impact factor:   15.683


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  14 in total

Review 1.  Charles Darwin, beetles and phylogenetics.

Authors:  Rolf G Beutel; Frank Friedrich; Richard A B Leschen
Journal:  Naturwissenschaften       Date:  2009-09-17

2.  Phylogenetic position of the acariform mites: sensitivity to homology assessment under total evidence.

Authors:  Almir R Pepato; Carlos E F da Rocha; Jason A Dunlop
Journal:  BMC Evol Biol       Date:  2010-08-02       Impact factor: 3.260

Review 3.  Progress, pitfalls and parallel universes: a history of insect phylogenetics.

Authors:  Karl M Kjer; Chris Simon; Margarita Yavorskaya; Rolf G Beutel
Journal:  J R Soc Interface       Date:  2016-08       Impact factor: 4.118

4.  AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis.

Authors:  Mohamed Radhouene Aniba; Olivier Poch; Aron Marchler-Bauer; Julie Dawn Thompson
Journal:  Nucleic Acids Res       Date:  2010-06-08       Impact factor: 16.971

5.  PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination.

Authors:  Robert Lücking; Brendan P Hodkinson; Alexandros Stamatakis; Reed A Cartwright
Journal:  BMC Bioinformatics       Date:  2011-01-07       Impact factor: 3.169

6.  Treelength optimization for phylogeny estimation.

Authors:  Kevin Liu; Tandy Warnow
Journal:  PLoS One       Date:  2012-03-19       Impact factor: 3.240

7.  Phylogenetic study of Class Armophorea (Alveolata, Ciliophora) based on 18S-rDNA data.

Authors:  Thiago da Silva Paiva; Bárbara do Nascimento Borges; Inácio Domingos da Silva-Neto
Journal:  Genet Mol Biol       Date:  2013-11-08       Impact factor: 1.771

8.  Phylogeny as a proxy for ecology in seagrass amphipods: which traits are most conserved?

Authors:  Rebecca J Best; John J Stachowicz
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

9.  Phylogenetic support values are not necessarily informative: the case of the Serialia hypothesis (a mollusk phylogeny).

Authors:  J Wolfgang Wägele; Harald Letsch; Annette Klussmann-Kolb; Christoph Mayer; Bernhard Misof; Heike Wägele
Journal:  Front Zool       Date:  2009-06-26       Impact factor: 3.172

10.  Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Authors:  Tamaki Yuri; Rebecca T Kimball; John Harshman; Rauri C K Bowie; Michael J Braun; Jena L Chojnowski; Kin-Lan Han; Shannon J Hackett; Christopher J Huddleston; William S Moore; Sushma Reddy; Frederick H Sheldon; David W Steadman; Christopher C Witt; Edward L Braun
Journal:  Biology (Basel)       Date:  2013-03-13
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