Literature DB >> 17359202

How Xenopus laevis replicates DNA reliably even though its origins of replication are located and initiated stochastically.

John Bechhoefer1, Brandon Marshall.   

Abstract

DNA replication in Xenopus laevis is extremely reliable, failing to complete before cell division no more than once in 10 000 times; yet replication origin sites are located and initiated stochastically. Using a model based on 1D theories of nucleation and growth and using concepts from extreme-value statistics, we derive the distribution of replication times given a particular initiation function. We show that the experimentally observed initiation strategy for Xenopus laevis meets the reliability constraint and is close to the one that requires the fewest resources of a cell.

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Year:  2007        PMID: 17359202     DOI: 10.1103/PhysRevLett.98.098105

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  11 in total

Review 1.  Global regulation of genome duplication in eukaryotes: an overview from the epifluorescence microscope.

Authors:  John Herrick; Aaron Bensimon
Journal:  Chromosoma       Date:  2008-01-16       Impact factor: 4.316

2.  The Hsk1(Cdc7) replication kinase regulates origin efficiency.

Authors:  Prasanta K Patel; Naveen Kommajosyula; Adam Rosebrock; Aaron Bensimon; Janet Leatherwood; John Bechhoefer; Nicholas Rhind
Journal:  Mol Biol Cell       Date:  2008-09-17       Impact factor: 4.138

3.  Mathematical modelling of eukaryotic DNA replication.

Authors:  Olivier Hyrien; Arach Goldar
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

4.  Just-in-time DNA replication.

Authors:  Suckjoon Jun; Nick Rhind
Journal:  Physics (College Park Md)       Date:  2008-10-27

5.  Mathematical modeling of genome replication.

Authors:  Renata Retkute; Conrad A Nieduszynski; Alessandro de Moura
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-09-17

6.  Cell-to-cell variability and robustness in S-phase duration from genome replication kinetics.

Authors:  Qing Zhang; Federico Bassetti; Marco Gherardi; Marco Cosentino Lagomarsino
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

7.  Modeling inhomogeneous DNA replication kinetics.

Authors:  Michel G Gauthier; Paolo Norio; John Bechhoefer
Journal:  PLoS One       Date:  2012-03-07       Impact factor: 3.240

8.  3D replicon distributions arise from stochastic initiation and domino-like DNA replication progression.

Authors:  D Löb; N Lengert; V O Chagin; M Reinhart; C S Casas-Delucchi; M C Cardoso; B Drossel
Journal:  Nat Commun       Date:  2016-04-07       Impact factor: 14.919

9.  Universal temporal profile of replication origin activation in eukaryotes.

Authors:  Arach Goldar; Marie-Claude Marsolier-Kergoat; Olivier Hyrien
Journal:  PLoS One       Date:  2009-06-12       Impact factor: 3.240

10.  A dynamic stochastic model for DNA replication initiation in early embryos.

Authors:  Arach Goldar; Hélène Labit; Kathrin Marheineke; Olivier Hyrien
Journal:  PLoS One       Date:  2008-08-06       Impact factor: 3.240

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