Literature DB >> 17359005

DNA bubble dynamics as a quantum Coulomb problem.

Hans C Fogedby1, Ralf Metzler.   

Abstract

We study the dynamics of denaturation bubbles in double-stranded DNA. Demonstrating that the associated Fokker-Planck equation is equivalent to a Coulomb problem, we derive expressions for the bubble survival distribution W(t). Below Tm, W(t) is associated with the continuum of scattering states of the repulsive Coulomb potential. At Tm, the Coulomb potential vanishes and W(t) assumes a power-law tail with nontrivial dynamic exponents: the critical exponent of the entropy loss factor may cause a finite mean lifetime. Above Tm (attractive potential), the long-time dynamics is controlled by the lowest bound state. Correlations and finite size effects are discussed.

Year:  2007        PMID: 17359005     DOI: 10.1103/PhysRevLett.98.070601

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  5 in total

1.  Localization and delocalization of energy in a Peyrard-Bishop chain.

Authors:  J M Silva; E Drigo Filho; J R Ruggiero
Journal:  Eur Phys J E Soft Matter       Date:  2009-06-24       Impact factor: 1.890

2.  Stacking interactions in denaturation of DNA fragments.

Authors:  M Zoli
Journal:  Eur Phys J E Soft Matter       Date:  2011-07-14       Impact factor: 1.890

3.  Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics.

Authors:  Kristy Nowak-Lovato; Ludmil B Alexandrov; Afsheen Banisadr; Amy L Bauer; Alan R Bishop; Anny Usheva; Fangping Mu; Elizabeth Hong-Geller; Kim Ø Rasmussen; William S Hlavacek; Boian S Alexandrov
Journal:  PLoS Comput Biol       Date:  2013-01-17       Impact factor: 4.475

4.  Solving the inverse problem of time independent Fokker-Planck equation with a self supervised neural network method.

Authors:  Wei Liu; Connie Khor Li Kou; Kun Hee Park; Hwee Kuan Lee
Journal:  Sci Rep       Date:  2021-07-30       Impact factor: 4.379

5.  Modelling Asymmetric Unemployment Dynamics: The Logarithmic-Harmonic Potential Approach.

Authors:  Cho-Hoi Hui; Chi-Fai Lo; Ho-Yan Ip
Journal:  Entropy (Basel)       Date:  2022-03-13       Impact factor: 2.524

  5 in total

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