Literature DB >> 17357083

Medical sequencing at the extremes of human body mass.

Nadav Ahituv1, Nihan Kavaslar, Wendy Schackwitz, Anna Ustaszewska, Joel Martin, Sybil Hebert, Heather Doelle, Baran Ersoy, Gregory Kryukov, Steffen Schmidt, Nir Yosef, Eytan Ruppin, Roded Sharan, Christian Vaisse, Shamil Sunyaev, Robert Dent, Jonathan Cohen, Ruth McPherson, Len A Pennacchio.   

Abstract

Body weight is a quantitative trait with significant heritability in humans. To identify potential genetic contributors to this phenotype, we resequenced the coding exons and splice junctions of 58 genes in 379 obese and 378 lean individuals. Our 96-Mb survey included 21 genes associated with monogenic forms of obesity in humans or mice, as well as 37 genes that function in body weight-related pathways. We found that the monogenic obesity-associated gene group was enriched for rare nonsynonymous variants unique to the obese population compared with the lean population. In addition, computational analysis predicted a greater fraction of deleterious variants within the obese cohort. Together, these data suggest that multiple rare alleles contribute to obesity in the population and provide a medical sequencing-based approach to detect them.

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Year:  2007        PMID: 17357083      PMCID: PMC1852707          DOI: 10.1086/513471

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  187 in total

1.  TGF-beta receptor type II deficiency results in defects of yolk sac hematopoiesis and vasculogenesis.

Authors:  M Oshima; H Oshima; M M Taketo
Journal:  Dev Biol       Date:  1996-10-10       Impact factor: 3.582

2.  Sequence variants in the 5' flanking region of the leptin gene are associated with obesity in women.

Authors:  W D Li; D R Reed; J H Lee; W Xu; R L Kilker; B R Sodam; R A Price
Journal:  Ann Hum Genet       Date:  1999-05       Impact factor: 1.670

3.  Decreased food intake and body weight in pancreatic polypeptide-overexpressing mice.

Authors:  N Ueno; A Inui; M Iwamoto; T Kaga; A Asakawa; M Okita; M Fujimiya; Y Nakajima; Y Ohmoto; M Ohnaka; Y Nakaya; J I Miyazaki; M Kasuga
Journal:  Gastroenterology       Date:  1999-12       Impact factor: 22.682

4.  Profound obesity associated with a balanced translocation that disrupts the SIM1 gene.

Authors:  J L Holder; N F Butte; A R Zinn
Journal:  Hum Mol Genet       Date:  2000-01-01       Impact factor: 6.150

5.  A genetic variation in the 5' flanking region of the UCP3 gene is associated with body mass index in humans in interaction with physical activity.

Authors:  S Otabe; K Clement; C Dina; V Pelloux; B Guy-Grand; P Froguel; F Vasseur
Journal:  Diabetologia       Date:  2000-02       Impact factor: 10.122

6.  Ectopic expression of the agouti gene in transgenic mice causes obesity, features of type II diabetes, and yellow fur.

Authors:  M L Klebig; J E Wilkinson; J G Geisler; R P Woychik
Journal:  Proc Natl Acad Sci U S A       Date:  1995-05-23       Impact factor: 11.205

7.  Role of ghrelin polymorphisms in obesity based on three different studies.

Authors:  Olavi Ukkola; Eric Ravussin; Peter Jacobson; Louis Pérusse; Tuomo Rankinen; Matthias Tschöp; Mark L Heiman; Arthur S Leon; D C Rao; James S Skinner; Jack H Wilmore; Lars Sjöström; Claude Bouchard
Journal:  Obes Res       Date:  2002-08

8.  A polymorphism in the leptin promoter region (-2548 G/A) influences gene expression and adipose tissue secretion of leptin.

Authors:  J Hoffstedt; P Eriksson; S Mottagui-Tabar; P Arner
Journal:  Horm Metab Res       Date:  2002-07       Impact factor: 2.936

9.  Sensitivity to leptin and susceptibility to seizures of mice lacking neuropeptide Y.

Authors:  J C Erickson; K E Clegg; R D Palmiter
Journal:  Nature       Date:  1996-05-30       Impact factor: 49.962

10.  A missense mutation disrupting a dibasic prohormone processing site in pro-opiomelanocortin (POMC) increases susceptibility to early-onset obesity through a novel molecular mechanism.

Authors:  Benjamin G Challis; Lynn E Pritchard; John W M Creemers; Jerome Delplanque; Julia M Keogh; Jian'an Luan; Nicholas J Wareham; Giles S H Yeo; Sumit Bhattacharyya; Phillipe Froguel; Anne White; I Sadaf Farooqi; Stephen O'Rahilly
Journal:  Hum Mol Genet       Date:  2002-08-15       Impact factor: 6.150

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  129 in total

1.  Exome sequencing and the genetic basis of complex traits.

Authors:  Adam Kiezun; Kiran Garimella; Ron Do; Nathan O Stitziel; Benjamin M Neale; Paul J McLaren; Namrata Gupta; Pamela Sklar; Patrick F Sullivan; Jennifer L Moran; Christina M Hultman; Paul Lichtenstein; Patrik Magnusson; Thomas Lehner; Yin Yao Shugart; Alkes L Price; Paul I W de Bakker; Shaun M Purcell; Shamil R Sunyaev
Journal:  Nat Genet       Date:  2012-05-29       Impact factor: 38.330

2.  Adaptive clustering and adaptive weighting methods to detect disease associated rare variants.

Authors:  Qiuying Sha; Shuaicheng Wang; Shuanglin Zhang
Journal:  Eur J Hum Genet       Date:  2012-07-11       Impact factor: 4.246

3.  Pooled association tests for rare variants in exon-resequencing studies.

Authors:  Alkes L Price; Gregory V Kryukov; Paul I W de Bakker; Shaun M Purcell; Jeff Staples; Lee-Jen Wei; Shamil R Sunyaev
Journal:  Am J Hum Genet       Date:  2010-05-13       Impact factor: 11.025

4.  High-throughput discovery of rare insertions and deletions in large cohorts.

Authors:  Francesco L M Vallania; Todd E Druley; Enrique Ramos; Jue Wang; Ingrid Borecki; Michael Province; Robi D Mitra
Journal:  Genome Res       Date:  2010-11-01       Impact factor: 9.043

Review 5.  Novelty Seeking and Drug Addiction in Humans and Animals: From Behavior to Molecules.

Authors:  Taylor Wingo; Tanseli Nesil; Jung-Seok Choi; Ming D Li
Journal:  J Neuroimmune Pharmacol       Date:  2015-10-19       Impact factor: 4.147

Review 6.  Statistical analysis of genetic interactions.

Authors:  Nengjun Yi
Journal:  Genet Res (Camb)       Date:  2010-12       Impact factor: 1.588

7.  Bayesian analysis of rare variants in genetic association studies.

Authors:  Nengjun Yi; Degui Zhi
Journal:  Genet Epidemiol       Date:  2011-01       Impact factor: 2.135

8.  Alternative approach to a heavy weight problem.

Authors:  Amir Goren; Eddo Kim; Maayan Amit; Ron Bochner; Galit Lev-Maor; Nadav Ahituv; Gil Ast
Journal:  Genome Res       Date:  2007-12-20       Impact factor: 9.043

Review 9.  The neuropathology of obesity: insights from human disease.

Authors:  Edward B Lee; Mark P Mattson
Journal:  Acta Neuropathol       Date:  2013-10-06       Impact factor: 17.088

10.  Oxytocin deficiency mediates hyperphagic obesity of Sim1 haploinsufficient mice.

Authors:  Bassil M Kublaoui; Terry Gemelli; Kristen P Tolson; Yu Wang; Andrew R Zinn
Journal:  Mol Endocrinol       Date:  2008-05-01
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