Literature DB >> 17351130

Evolution and multilevel optimization of the genetic code.

Tobias Bollenbach1, Kalin Vetsigian, Roy Kishony.   

Abstract

The discovery of the genetic code was one of the most important advances of modern biology. But there is more to a DNA code than protein sequence; DNA carries signals for splicing, localization, folding, and regulation that are often embedded within the protein-coding sequence. In this issue, Itzkovitz and Alon show that the specific 64-to-20 mapping found in the genetic code may have been optimized for permitting protein-coding regions to carry this extra information and suggest that this property may have evolved as a side benefit of selection to minimize the negative effects of frameshift errors.

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Year:  2007        PMID: 17351130     DOI: 10.1101/gr.6144007

Source DB:  PubMed          Journal:  Genome Res        ISSN: 1088-9051            Impact factor:   9.043


  10 in total

Review 1.  Noncoding RNA in development.

Authors:  Paulo P Amaral; John S Mattick
Journal:  Mamm Genome       Date:  2008-10-07       Impact factor: 2.957

2.  Limitations of the 'ambush hypothesis' at the single-gene scale: what codon biases are to blame?

Authors:  Robert L Bertrand; Mona Abdel-Hameed; John L Sorensen
Journal:  Mol Genet Genomics       Date:  2014-10-12       Impact factor: 3.291

3.  An exonic splicing enhancer within a bidirectional coding sequence regulates alternative splicing of an antisense mRNA.

Authors:  Valerie K Salato; Nathaniel W Rediske; Chao Zhang; Michelle L Hastings; Stephen H Munroe
Journal:  RNA Biol       Date:  2010-03-08       Impact factor: 4.652

4.  A model-independent approach to infer hierarchical codon substitution dynamics.

Authors:  Olof Görnerup; Martin Nilsson Jacobi
Journal:  BMC Bioinformatics       Date:  2010-04-23       Impact factor: 3.169

5.  Single-nucleotide variations associated with Mycobacterium tuberculosis KwaZulu-Natal strains.

Authors:  Sarbashis Das; Ragothaman M Yennamalli; Anchal Vishnoi; Parul Gupta; Alok Bhattacharya
Journal:  J Biosci       Date:  2009-09       Impact factor: 1.826

6.  A Coding Sequence-Embedded Principle Governs Translational Reading Frame Fidelity.

Authors:  Ji Wan; Xiangwei Gao; Yuanhui Mao; Xingqian Zhang; Shu-Bing Qian
Journal:  Research (Wash D C)       Date:  2018-09-20

7.  On programmed ribosomal frameshifting: the alternative proteomes.

Authors:  Robin Ketteler
Journal:  Front Genet       Date:  2012-11-19       Impact factor: 4.599

8.  Using triplet periodicity of nucleotide sequences for finding potential reading frame shifts in genes.

Authors:  F E Frenkel; E V Korotkov
Journal:  DNA Res       Date:  2009-03-03       Impact factor: 4.458

Review 9.  Different types of secondary information in the genetic code.

Authors:  Richard J Maraia; James R Iben
Journal:  RNA       Date:  2014-07       Impact factor: 4.942

10.  A content-centric organization of the genetic code.

Authors:  Jun Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2007-02       Impact factor: 7.691

  10 in total

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