Literature DB >> 17350110

Off-target effects associated with long dsRNAs in Drosophila RNAi screens.

Jason Moffat1, Jan H Reiling, David M Sabatini.   

Abstract

Evidence of off-target effects (OTEs) associated with small interfering (si)RNAs (19-29bp) in mammalian cells has existed for several years. Two recent articles demonstrate that short sequences within long double-stranded (ds)RNAs frequently cause undesirable OTEs in cultured Drosophila cells. These results reveal the potential for high false-positive rates in RNA interference (RNAi) screens using long dsRNAs and highlight the need for screening with multiple, non-overlapping long dsRNAs or siRNAs. Discovering multiple potent siRNAs with minimal off-target profiles for each target transcript will be invaluable for genome-based studies of gene function and for personalized RNAi therapeutics.

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Year:  2007        PMID: 17350110     DOI: 10.1016/j.tips.2007.02.009

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  26 in total

1.  Pollen lethality: a phenomenon in Arabidopsis RNA interference plants.

Authors:  Shuping Xing; Sabine Zachgo
Journal:  Plant Physiol       Date:  2007-10       Impact factor: 8.340

2.  Essential gene profiles in breast, pancreatic, and ovarian cancer cells.

Authors:  Richard Marcotte; Kevin R Brown; Fernando Suarez; Azin Sayad; Konstantina Karamboulas; Paul M Krzyzanowski; Fabrice Sircoulomb; Mauricio Medrano; Yaroslav Fedyshyn; Judice L Y Koh; Dewald van Dyk; Bodhana Fedyshyn; Marianna Luhova; Glauber C Brito; Franco J Vizeacoumar; Frederick S Vizeacoumar; Alessandro Datti; Dahlia Kasimer; Alla Buzina; Patricia Mero; Christine Misquitta; Josee Normand; Maliha Haider; Troy Ketela; Jeffrey L Wrana; Robert Rottapel; Benjamin G Neel; Jason Moffat
Journal:  Cancer Discov       Date:  2011-12-29       Impact factor: 39.397

3.  UP-TORR: online tool for accurate and Up-to-Date annotation of RNAi Reagents.

Authors:  Yanhui Hu; Charles Roesel; Ian Flockhart; Lizabeth Perkins; Norbert Perrimon; Stephanie E Mohr
Journal:  Genetics       Date:  2013-06-21       Impact factor: 4.562

Review 4.  Evaluation and control of miRNA-like off-target repression for RNA interference.

Authors:  Heeyoung Seok; Haejeong Lee; Eun-Sook Jang; Sung Wook Chi
Journal:  Cell Mol Life Sci       Date:  2017-09-13       Impact factor: 9.261

Review 5.  Analysis of glial cell development and function in Drosophila.

Authors:  Tobias Stork; Rebecca Bernardos; Marc R Freeman
Journal:  Cold Spring Harb Protoc       Date:  2012-01-01

6.  Detrimental effects of RNAi: a cautionary note on its use in Drosophila ageing studies.

Authors:  Nazif Alic; Matthew P Hoddinott; Andrea Foley; Cathy Slack; Matthew D W Piper; Linda Partridge
Journal:  PLoS One       Date:  2012-09-17       Impact factor: 3.240

7.  RNAi experiments in D. melanogaster: solutions to the overlooked problem of off-targets shared by independent dsRNAs.

Authors:  Erwin Seinen; Johannes G M Burgerhof; Ritsert C Jansen; Ody C M Sibon
Journal:  PLoS One       Date:  2010-10-01       Impact factor: 3.240

8.  A novel method for tissue-specific RNAi rescue in Drosophila.

Authors:  Joachim G Schulz; Guido David; Bassem A Hassan
Journal:  Nucleic Acids Res       Date:  2009-05-29       Impact factor: 16.971

9.  Efficient siRNA delivery by the cationic liposome DOTAP in human hematopoietic stem cells differentiating into dendritic cells.

Authors:  Sabata Martino; Ilaria di Girolamo; Roberto Tiribuzi; Francesco D'Angelo; Alessandro Datti; Aldo Orlacchio
Journal:  J Biomed Biotechnol       Date:  2009-05-31

10.  An efficient RNA interference screening strategy for gene functional analysis.

Authors:  Chih-Hung Chang; Hsiang-Iu Wang; Hsiang-Chia Lu; Cheng-En Chen; Hong-Hwa Chen; Hsin-Hung Yeh; Chuan Yi Tang
Journal:  BMC Genomics       Date:  2012-09-18       Impact factor: 3.969

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