Literature DB >> 17347523

Functional taxonomy of bacterial hyperstructures.

Vic Norris1, Tanneke den Blaauwen, Armelle Cabin-Flaman, Roy H Doi, Rasika Harshey, Laurent Janniere, Alfonso Jimenez-Sanchez, Ding Jun Jin, Petra Anne Levin, Eugenia Mileykovskaya, Abraham Minsky, Milton Saier, Kirsten Skarstad.   

Abstract

The levels of organization that exist in bacteria extend from macromolecules to populations. Evidence that there is also a level of organization intermediate between the macromolecule and the bacterial cell is accumulating. This is the level of hyperstructures. Here, we review a variety of spatially extended structures, complexes, and assemblies that might be termed hyperstructures. These include ribosomal or "nucleolar" hyperstructures; transertion hyperstructures; putative phosphotransferase system and glycolytic hyperstructures; chemosignaling and flagellar hyperstructures; DNA repair hyperstructures; cytoskeletal hyperstructures based on EF-Tu, FtsZ, and MreB; and cell cycle hyperstructures responsible for DNA replication, sequestration of newly replicated origins, segregation, compaction, and division. We propose principles for classifying these hyperstructures and finally illustrate how thinking in terms of hyperstructures may lead to a different vision of the bacterial cell.

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Year:  2007        PMID: 17347523      PMCID: PMC1847379          DOI: 10.1128/MMBR.00035-06

Source DB:  PubMed          Journal:  Microbiol Mol Biol Rev        ISSN: 1092-2172            Impact factor:   11.056


  267 in total

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Review 2.  The possible role of electromagnetic fields in bacterial communication.

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Journal:  J Microbiol Immunol Infect       Date:  2003-09       Impact factor: 4.399

3.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
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Review 4.  Functional aspects of cellular microcompartmentation in the development of neurodegeneration: mutation induced aberrant protein-protein associations.

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Journal:  Mol Cell Biochem       Date:  2004 Jan-Feb       Impact factor: 3.396

5.  Polar location of the chemoreceptor complex in the Escherichia coli cell.

Authors:  J R Maddock; L Shapiro
Journal:  Science       Date:  1993-03-19       Impact factor: 47.728

Review 6.  Role of membrane lipids in bacterial division-site selection.

Authors:  Eugenia Mileykovskaya; William Dowhan
Journal:  Curr Opin Microbiol       Date:  2005-04       Impact factor: 7.934

7.  Rad52 forms DNA repair and recombination centers during S phase.

Authors:  M Lisby; R Rothstein; U H Mortensen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

8.  SlmA, a nucleoid-associated, FtsZ binding protein required for blocking septal ring assembly over Chromosomes in E. coli.

Authors:  Thomas G Bernhardt; Piet A J de Boer
Journal:  Mol Cell       Date:  2005-05-27       Impact factor: 17.970

9.  The yeast Mcm1 protein is regulated posttranscriptionally by the flux of glycolysis.

Authors:  Y Chen; B K Tye
Journal:  Mol Cell Biol       Date:  1995-08       Impact factor: 4.272

10.  A magnesium-dependent mreB null mutant: implications for the role of mreB in Bacillus subtilis.

Authors:  Alex Formstone; Jeffery Errington
Journal:  Mol Microbiol       Date:  2005-03       Impact factor: 3.501

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  30 in total

Review 1.  Electron cryotomography.

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Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

2.  Double-strand break generation under deoxyribonucleotide starvation in Escherichia coli.

Authors:  Estrella Guarino; Israel Salguero; Alfonso Jiménez-Sánchez; Elena C Guzmán
Journal:  J Bacteriol       Date:  2007-05-25       Impact factor: 3.490

3.  Question 7: the first units of life were not simple cells.

Authors:  Vic Norris; Axel Hunding; Francois Kepes; Doron Lancet; Abraham Minsky; Derek Raine; Robert Root-Bernstein; K Sriram
Journal:  Orig Life Evol Biosph       Date:  2007-07-10       Impact factor: 1.950

Review 4.  Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution.

Authors:  Ming Ren Yen; Jeehye Choi; Milton H Saier
Journal:  J Mol Microbiol Biotechnol       Date:  2009-09-18

5.  On the impact of the distance between two genes on their interaction curve.

Authors:  Siamak Taati; Enrico Formenti; Jean-Paul Comet; Gilles Bernot
Journal:  J Math Biol       Date:  2011-02-15       Impact factor: 2.259

Review 6.  From water and ions to crowded biomacromolecules: in vivo structuring of a prokaryotic cell.

Authors:  Jan Spitzer
Journal:  Microbiol Mol Biol Rev       Date:  2011-09       Impact factor: 11.056

Review 7.  Microorganisms maintain crowding homeostasis.

Authors:  Jonas van den Berg; Arnold J Boersma; Bert Poolman
Journal:  Nat Rev Microbiol       Date:  2017-03-27       Impact factor: 60.633

8.  A reduction in ribonucleotide reductase activity slows down the chromosome replication fork but does not change its localization.

Authors:  Ingvild Odsbu; Kirsten Skarstad
Journal:  PLoS One       Date:  2009-10-28       Impact factor: 3.240

Review 9.  The eukaryotic cell originated in the integration and redistribution of hyperstructures from communities of prokaryotic cells based on molecular complementarity.

Authors:  Vic Norris; Robert Root-Bernstein
Journal:  Int J Mol Sci       Date:  2009-06-04       Impact factor: 6.208

10.  Correlation between ribonucleoside-diphosphate reductase and three replication proteins in Escherichia coli.

Authors:  M Antonia Sánchez-Romero; Felipe Molina; Alfonso Jiménez-Sánchez
Journal:  BMC Mol Biol       Date:  2010-01-26       Impact factor: 2.946

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