Literature DB >> 17340602

Theoretical calculations: can Gibbs free energy for intermolecular complexes be predicted efficiently and accurately?

Olexandr Isayev1, Leonid Gorb1, Jerzy Leszczynski1.   

Abstract

The theoretical study has been performed to refine the procedure for calculations of Gibbs free energy with a relative accuracy of less than 1 kcal/mol. Three benchmark intermolecular complexes are examined via several quantum-chemical methods, including the second-order Moller-Plesset perturbation (MP2), coupled cluster (CCSD(T)), and density functional (BLYP, B3LYP) theories augmented by Dunnings correlation-consistent basis sets. The effects of electron correlation, basis set size, and anharmonicity are systematically analyzed, and the results are compared with available experimental data. The results of the calculations suggest that experimental accuracy can be reached only by extrapolation of MP2 and CCSD(T) total energies to the complete basis set. The contribution of anharmonicity to the zero point energy and TDeltaSint values is fairly small. The new, economic way to reach chemical accuracy in the calculations of the thermodynamic parameters of intermolecular interactions is proposed. In addition, interaction energy (De) and free energy change (DeltaA) for considered species have been evaluated by Carr-Parrinello molecular dynamics (CPMD) simulations and static BLYP-plane wave calculations. The free energy change along the reaction paths were determined by the thermodynamic integration/"Blue Moon Ensemble" technique. Comparison between obtained values, and available experimental and conventional ab initio results has been made. We found that the accuracy of CPMD simulations is affected by several factors, including statistical uncertainty and convergence of constrained forces (TD integration), and the nature of DFT (density functional theory) functional. The results show that CPMD technique is capable of reproducing interaction and free energy with an accuracy of 1 kcal/mol and 2-3 kcal/mol respectively. Copyright (c) 2007 Wiley Periodicals, Inc.

Entities:  

Year:  2007        PMID: 17340602     DOI: 10.1002/jcc.20696

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  2 in total

1.  Comparison of free energy surfaces calculations from ab initio molecular dynamic simulations at the example of two transition metal catalyzed reactions.

Authors:  Marc Brüssel; Philipp J di Dio; Kilian Muñiz; Barbara Kirchner
Journal:  Int J Mol Sci       Date:  2011-02-23       Impact factor: 5.923

2.  Molecular determinants of epidermal growth factor binding: a molecular dynamics study.

Authors:  Jeffrey M Sanders; Matthew E Wampole; Mathew L Thakur; Eric Wickstrom
Journal:  PLoS One       Date:  2013-01-24       Impact factor: 3.240

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.