Literature DB >> 17337544

Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum.

Susan M Barns1, Elizabeth C Cain, Leslie Sommerville, Cheryl R Kuske.   

Abstract

The abundance and composition of bacteria of the phylum Acidobacteria were surveyed in subsurface sediments from uranium-contaminated sites using amplification of 16S rRNA genes followed by clone/sequence analysis. Analysis of sequences from this study and public databases produced a revised and greatly expanded phylogeny of the Acidobacteria phylum consisting of 26 subgroups.

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Year:  2007        PMID： 17337544      PMCID： PMC1892891          DOI： 10.1128/AEM.02012-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

1.  Simultaneous recovery of RNA and DNA from soils and sediments.

Authors:  R A Hurt; X Qiu; L Wu; Y Roh; A V Palumbo; J M Tiedje; J Zhou
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

2.  Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate.

Authors:  Nadia N North; Sherry L Dollhopf; Lainie Petrie; Jonathan D Istok; David L Balkwill; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

3.  Detection and in situ identification of representatives of a widely distributed new bacterial phylum.

Authors:  W Ludwig; S H Bauer; M Bauer; I Held; G Kirchhof; R Schulze; I Huber; S Spring; A Hartmann; K H Schleifer
Journal:  FEMS Microbiol Lett       Date:  1997-08-01       Impact factor: 2.742

4.  Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.

Authors:  D J Lane; B Pace; G J Olsen; D A Stahl; M L Sogin; N R Pace
Journal:  Proc Natl Acad Sci U S A       Date:  1985-10       Impact factor: 11.205

Review 5.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

6.  Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions.

Authors:  C R Kuske; S M Barns; J D Busch
Journal:  Appl Environ Microbiol       Date:  1997-09       Impact factor: 4.792

7.  Environmental survey for four pathogenic bacteria and closely related species using phylogenetic and functional genes.

Authors:  Cheryl R Kuske; Susan M Barns; Christy C Grow; Lori Merrill; John Dunbar
Journal:  J Forensic Sci       Date:  2006-05       Impact factor: 1.832

8.  Enumeration and characterization of iron(III)-reducing microbial communities from acidic subsurface sediments contaminated with uranium(VI).

Authors:  Lainie Petrie; Nadia N North; Sherry L Dollhopf; David L Balkwill; Joel E Kostka
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

9.  In situ bioreduction of technetium and uranium in a nitrate-contaminated aquifer.

Authors:  J D Istok; J M Senko; L R Krumholz; D Watson; M A Bogle; A Peacock; Y J Chang; D C White
Journal:  Environ Sci Technol       Date:  2004-01-15       Impact factor: 9.028

10.  Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer.

Authors:  Robert T Anderson; Helen A Vrionis; Irene Ortiz-Bernad; Charles T Resch; Philip E Long; Richard Dayvault; Ken Karp; Sam Marutzky; Donald R Metzler; Aaron Peacock; David C White; Mary Lowe; Derek R Lovley
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792
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  94 in total

1.  13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Johan W H Weijers; Bärbel U Foesel; Jörg Overmann; Svetlana N Dedysh
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

2.  Acidobacteria in freshwater ponds at Doñana National Park, Spain.

Authors:  Johannes Zimmermann; M Carmen Portillo; Laura Serrano; Wolfgang Ludwig; Juan M Gonzalez
Journal:  Microb Ecol       Date:  2011-12-15       Impact factor: 4.552

3.  In-depth characterization via complementing culture-independent approaches of the microbial community in an acidic hot spring of the Colombian Andes.

Authors:  Laura C Bohorquez; Luisa Delgado-Serrano; Gina López; César Osorio-Forero; Vanja Klepac-Ceraj; Roberto Kolter; Howard Junca; Sandra Baena; María Mercedes Zambrano
Journal:  Microb Ecol       Date:  2011-09-27       Impact factor: 4.552

4.  Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

Authors:  Anna M Kielak; Johannes A van Veen; George A Kowalchuk
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

5.  Bacterial diversity in the sediment from polymetallic nodule fields of the Clarion-Clipperton Fracture Zone.

Authors:  Chun-Sheng Wang; Li Liao; Hong-Xiang Xu; Xue-Wei Xu; Min Wu; Li-Zhong Zhu
Journal:  J Microbiol       Date:  2010-11-03       Impact factor: 3.422

6.  Microbial community changes in response to ethanol or methanol amendments for U(VI) reduction.

Authors:  Tatiana A Vishnivetskaya; Craig C Brandt; Andrew S Madden; Meghan M Drake; Joel E Kostka; Denise M Akob; Kirsten Küsel; Anthony V Palumbo
Journal:  Appl Environ Microbiol       Date:  2010-07-02       Impact factor: 4.792

7.  Influence of plant polymers on the distribution and cultivation of bacteria in the phylum Acidobacteria.

Authors:  Stephanie A Eichorst; Cheryl R Kuske; Thomas M Schmidt
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

8.  Change in bacterial community structure in response to disturbance of natural hardwood and secondary coniferous forest soils in central taiwan.

Authors:  Yu-Te Lin; Kamlesh Jangid; William B Whitman; David C Coleman; Chih-Yu Chiu
Journal:  Microb Ecol       Date:  2010-09-29       Impact factor: 4.552

9.  Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes.

Authors:  Christiane Will; Andrea Thürmer; Antje Wollherr; Heiko Nacke; Nadine Herold; Marion Schrumpf; Jessica Gutknecht; Tesfaye Wubet; François Buscot; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2010-08-20       Impact factor: 4.792

10.  Geogenic Factors as Drivers of Microbial Community Diversity in Soils Overlying Polymetallic Deposits.

Authors:  Frank Reith; Carla M Zammit; Rebecca Pohrib; Adrienne L Gregg; Steven A Wakelin
Journal:  Appl Environ Microbiol       Date:  2015-09-04       Impact factor: 4.792
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