Literature DB >> 17332021

Phylogenetic exploration of bacterial genomic rearrangements.

Romain Fremez1, Thomas Faraut, Gwennaele Fichant, Jérôme Gouzy, Yves Quentin.   

Abstract

UNLABELLED: We present a graphical tool dedicated to the exploration of bacterial genome rearrangements. The principle of this exploration relies on the reconstruction of ancestral genomes at each internal node of a gene-order-based phylogenetic tree. This tool allows the selection of internal nodes to visualize the rearrangements between the inferred chromosome of this node and its direct descendant on the tree. AVAILABILITY: PEGR is available at the Genopole Toulouse Bioinformatics platform.

Mesh:

Year:  2007        PMID: 17332021     DOI: 10.1093/bioinformatics/btm070

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  MetaPGN: a pipeline for construction and graphical visualization of annotated pangenome networks.

Authors:  Ye Peng; Shanmei Tang; Dan Wang; Huanzi Zhong; Huijue Jia; Xianghang Cai; Zhaoxi Zhang; Minfeng Xiao; Huanming Yang; Jian Wang; Karsten Kristiansen; Xun Xu; Junhua Li
Journal:  Gigascience       Date:  2018-11-01       Impact factor: 6.524

2.  Seevolution: visualizing chromosome evolution.

Authors:  Andrés Esteban-Marcos; Aaron E Darling; Mark A Ragan
Journal:  Bioinformatics       Date:  2009-02-20       Impact factor: 6.937

  2 in total

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