Literature DB >> 17324372

Structural studies examining the substrate specificity profiles of PC-PLC(Bc) protein variants.

Aaron P Benfield1, Nina M Goodey, Lauren T Phillips, Stephen F Martin.   

Abstract

The phosphatidylcholine preferring phospholipase C from Bacillus cereus (PC-PLC(Bc)) catalyzes the hydrolysis of phospholipids in the following order of preference: phosphatidylcholine (PC)>phosphatidylethanolamine (PE)>phosphatidylserine (PS). In previous work, mutagenic, kinetic, and crystallographic experiments suggested that varying the amino acids at the 4th, 56th, and 66th positions had a significant influence upon the substrate specificity profile of PC-PLC(Bc). Here, we report the crystal structures of the native form of several PC-PLC(Bc) variants that exhibited altered substrate specificities for PC, PE, and PS at maximum resolutions of 1.90-2.05 Angstrom. Comparing the structures of these variants to the structure of the wild-type enzyme reveals only minor differences with respect to the number and location of active site water molecules and the side chain conformations of residues at the 4th and 56th positions. These results suggest that subtle changes in steric and electronic properties in the substrate binding site of PC-PLC(Bc) are responsible for the significant changes in substrate selectivity.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17324372      PMCID: PMC1905842          DOI: 10.1016/j.abb.2007.01.023

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  22 in total

1.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

2.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 3.  Weakly polar interactions in proteins.

Authors:  S K Burley; G A Petsko
Journal:  Adv Protein Chem       Date:  1988

4.  Determination of the kinetic parameters for phospholipase C (Bacillus cereus) on different phospholipid substrates using a chromogenic assay based on the quantitation of inorganic phosphate.

Authors:  P J Hergenrother; S F Martin
Journal:  Anal Biochem       Date:  1997-08-15       Impact factor: 3.365

Review 5.  Cation-pi bonding and amino-aromatic interactions in the biomolecular recognition of substituted ammonium ligands.

Authors:  N S Scrutton; A R Raine
Journal:  Biochem J       Date:  1996-10-01       Impact factor: 3.857

6.  Bacillus cereus phospholipase C: carboxylic acid ester specificity and stereoselectivity.

Authors:  W R Snyder
Journal:  Biochim Biophys Acta       Date:  1987-07-31

7.  The choline binding site of phospholipase C (Bacillus cereus): insights into substrate specificity.

Authors:  S F Martin; B C Follows; P J Hergenrother; B K Trotter
Journal:  Biochemistry       Date:  2000-03-28       Impact factor: 3.162

8.  Altering substrate specificity of phosphatidylcholine-preferring phospholipase C of Bacillus cereus by random mutagenesis of the headgroup binding site.

Authors:  Nina M Antikainen; Paul J Hergenrother; Micheleen M Harris; William Corbett; Stephen F Martin
Journal:  Biochemistry       Date:  2003-02-18       Impact factor: 3.162

9.  Sensitivity of phospholipase C (Bacillus cereus) activity to phosphatidylcholine structural modifications.

Authors:  M Y el-Sayed; C D DeBose; L A Coury; M F Roberts
Journal:  Biochim Biophys Acta       Date:  1985-12-04

10.  Amino acids of the Torpedo marmorata acetylcholine receptor alpha subunit labeled by a photoaffinity ligand for the acetylcholine binding site.

Authors:  M Dennis; J Giraudat; F Kotzyba-Hibert; M Goeldner; C Hirth; J Y Chang; C Lazure; M Chrétien; J P Changeux
Journal:  Biochemistry       Date:  1988-04-05       Impact factor: 3.162

View more
  5 in total

1.  Requirements for transitional endoplasmic reticulum site structure and function in Saccharomyces cerevisiae.

Authors:  Polina Shindiapina; Charles Barlowe
Journal:  Mol Biol Cell       Date:  2010-03-03       Impact factor: 4.138

2.  In vitro analysis of the Staphylococcus aureus lipoteichoic acid synthase enzyme using fluorescently labeled lipids.

Authors:  Maria Karatsa-Dodgson; Mirka E Wörmann; Angelika Gründling
Journal:  J Bacteriol       Date:  2010-08-13       Impact factor: 3.490

3.  Design and synthesis of phospholipase C and A2-activatable near-infrared fluorescent smart probes.

Authors:  Anatoliy V Popov; Theresa M Mawn; Soungkyoo Kim; Gang Zheng; E James Delikatny
Journal:  Bioconjug Chem       Date:  2010-10-20       Impact factor: 4.774

4.  A quantitative continuous enzyme assay of intramolecularly quenched fluorogenic phospholipase substrates for molecular imaging.

Authors:  Theresa M Mawn; Anatoliy V Popov; E James Delikatny
Journal:  Anal Biochem       Date:  2011-12-09       Impact factor: 3.365

5.  The Legionella pneumophila Dot/Icm-secreted effector PlcC/CegC1 together with PlcA and PlcB promotes virulence and belongs to a novel zinc metallophospholipase C family present in bacteria and fungi.

Authors:  Philipp Aurass; Maren Schlegel; Omar Metwally; Clare R Harding; Gunnar N Schroeder; Gad Frankel; Antje Flieger
Journal:  J Biol Chem       Date:  2013-03-01       Impact factor: 5.157

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.