Literature DB >> 17324265

Effective quantitative real-time polymerase chain reaction analysis of the parkin gene (PARK2) exon 1-12 dosage.

Maria I Shadrina1, Elena V Semenova, Petr A Slominsky, Gulbahar H Bagyeva, Sergei N Illarioshkin, Irina I Ivanova-Smolenskaia, Svetlana A Limborska.   

Abstract

BACKGROUND: One of the causes of Parkinson's disease is mutations in the PARK2 gene. Deletions and duplications of single exons or exon groups account for a large proportion of the gene mutations. Direct detection of these mutations can be used for the diagnosis of Parkinson's disease.
METHODS: To detect these mutations, we developed an effective technique based on the real-time TaqMan PCR system, which allows us to evaluate the copynumbers of the PARK2 gene exons by comparing the intensity of the amplification signals from some exon of this gene with that of the beta-globin gene (the internal control).
RESULTS: We analyzed rearrangements in exons 1-12 of the PARK2 gene in 64 patients from Russia with early-onset Parkinson's disease. The frequency of these mutations in our patients was 14%.
CONCLUSION: We have developed a simple, accurate, and reproducible method applicable to the rapid detection of exon rearrangements in the PARK2 gene. It is suitable for the analysis of large patient groups, and it may become the basis for a diagnostic test.

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Year:  2007        PMID: 17324265      PMCID: PMC1810516          DOI: 10.1186/1471-2350-8-6

Source DB:  PubMed          Journal:  BMC Med Genet        ISSN: 1471-2350            Impact factor:   2.103


  25 in total

1.  Positron emission tomographic analysis of the nigrostriatal dopaminergic system in familial parkinsonism associated with mutations in the parkin gene.

Authors:  R Hilker; C Klein; M Ghaemi; B Kis; T Strotmann; L J Ozelius; O Lenz; P Vieregge; K Herholz; W D Heiss; P P Pramstaller
Journal:  Ann Neurol       Date:  2001-03       Impact factor: 10.422

2.  Association between early-onset Parkinson's disease and mutations in the parkin gene.

Authors:  C B Lücking; A Dürr; V Bonifati; J Vaughan; G De Michele; T Gasser; B S Harhangi; G Meco; P Denèfle; N W Wood; Y Agid; A Brice
Journal:  N Engl J Med       Date:  2000-05-25       Impact factor: 91.245

3.  The importance of gene dosage studies: mutational analysis of the parkin gene in early-onset parkinsonism.

Authors:  K Hedrich; M Kann; A J Lanthaler; A Dalski; C Eskelson; O Landt; E Schwinger; P Vieregge; A E Lang; X O Breakefield; L J Ozelius; P P Pramstaller; C Klein
Journal:  Hum Mol Genet       Date:  2001-08-01       Impact factor: 6.150

4.  Novel mutations, pseudo-dominant inheritance, and possible familial affects in patients with autosomal recessive juvenile parkinsonism.

Authors:  M Maruyama; T Ikeuchi; M Saito; A Ishikawa; T Yuasa; H Tanaka; S Hayashi; K Wakabayashi; H Takahashi; S Tsuji
Journal:  Ann Neurol       Date:  2000-08       Impact factor: 10.422

5.  Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification.

Authors:  Jan P Schouten; Cathal J McElgunn; Raymond Waaijer; Danny Zwijnenburg; Filip Diepvens; Gerard Pals
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

6.  Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism.

Authors:  T Kitada; S Asakawa; N Hattori; H Matsumine; Y Yamamura; S Minoshima; M Yokochi; Y Mizuno; N Shimizu
Journal:  Nature       Date:  1998-04-09       Impact factor: 49.962

7.  Prevalence of parkin gene mutations and variations in idiopathic Parkinson's disease.

Authors:  Rashmi Sinha; Brad Racette; Joel S Perlmutter; Abbas Parsian
Journal:  Parkinsonism Relat Disord       Date:  2005-09       Impact factor: 4.891

8.  A wide variety of mutations in the parkin gene are responsible for autosomal recessive parkinsonism in Europe. French Parkinson's Disease Genetics Study Group and the European Consortium on Genetic Susceptibility in Parkinson's Disease.

Authors:  N Abbas; C B Lücking; S Ricard; A Dürr; V Bonifati; G De Michele; S Bouley; J R Vaughan; T Gasser; R Marconi; E Broussolle; C Brefel-Courbon; B S Harhangi; B A Oostra; E Fabrizio; G A Böhme; L Pradier; N W Wood; A Filla; G Meco; P Denefle; Y Agid; A Brice
Journal:  Hum Mol Genet       Date:  1999-04       Impact factor: 6.150

9.  Complex relationship between Parkin mutations and Parkinson disease.

Authors:  Andrew West; Magali Periquet; Sarah Lincoln; Christoph B Lücking; David Nicholl; Vincenzo Bonifati; Nina Rawal; Thomas Gasser; Ebba Lohmann; Jean-François Deleuze; Demetrius Maraganore; Allan Levey; Nick Wood; Alexandra Dürr; John Hardy; Alexis Brice; Matt Farrer
Journal:  Am J Med Genet       Date:  2002-07-08

10.  Localization of a novel locus for autosomal recessive early-onset parkinsonism, PARK6, on human chromosome 1p35-p36.

Authors:  E M Valente; A R Bentivoglio; P H Dixon; A Ferraris; T Ialongo; M Frontali; A Albanese; N W Wood
Journal:  Am J Hum Genet       Date:  2001-03-07       Impact factor: 11.025

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  9 in total

1.  Determination of exon 7 SMN1 deletion in Iranian patients and heterozygous carriers by quantitative real-time PCR.

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Journal:  J Genet       Date:  2011-04       Impact factor: 1.166

Review 2.  Chromosomal abnormality, laboratory techniques, tools and databases in molecular Cytogenetics.

Authors:  Abbasali Emamjomeh; Behzad Hajieghrari; Somayeh Montazerinezhad
Journal:  Mol Biol Rep       Date:  2020-10-26       Impact factor: 2.316

3.  Analysis of exon dosage using MLPA in South African Parkinson's disease patients.

Authors:  Rowena J Keyser; Debbie Lombard; Rene Veikondis; Jonathan Carr; Soraya Bardien
Journal:  Neurogenetics       Date:  2009-12-15       Impact factor: 2.660

4.  Identification of a heterozygous genomic deletion in the spatacsin gene in SPG11 patients using high-resolution comparative genomic hybridization.

Authors:  Peter Bauer; Beate Winner; Rebecca Schüle; Claudia Bauer; Veronika Häfele; Ute Hehr; Michael Bonin; Michael Walter; Kathrin Karle; Thomas M Ringer; Olaf Riess; Jürgen Winkler; Ludger Schöls
Journal:  Neurogenetics       Date:  2008-09-12       Impact factor: 2.660

5.  Entire genome characterization of human papillomavirus type 16 from infected Thai women with different cytological findings.

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Journal:  Virus Genes       Date:  2009-05-03       Impact factor: 2.332

6.  Genome-wide analysis reveals adaptation to high altitudes in Tibetan sheep.

Authors:  Caihong Wei; Huihua Wang; Gang Liu; Fuping Zhao; James W Kijas; Youji Ma; Jian Lu; Li Zhang; Jiaxue Cao; Mingming Wu; Guangkai Wang; Ruizao Liu; Zhen Liu; Shuzhen Zhang; Chousheng Liu; Lixin Du
Journal:  Sci Rep       Date:  2016-05-27       Impact factor: 4.379

Review 7.  Copy number variability in Parkinson's disease: assembling the puzzle through a systems biology approach.

Authors:  Valentina La Cognata; Giovanna Morello; Velia D'Agata; Sebastiano Cavallaro
Journal:  Hum Genet       Date:  2016-11-28       Impact factor: 4.132

8.  Genetic diversity and phylogenetic analysis of HPV 16 & 18 variants isolated from cervical specimens of women in Saudi Arabia.

Authors:  Khalid Sait; Rola Turki; Adel Mohammed Abuzenadah; Osama H Jiffiri; Abdulbaset Bohmaidah; Sayed Sartaj Sohrab
Journal:  Saudi J Biol Sci       Date:  2018-05-03       Impact factor: 4.219

9.  GSTM1 copy number variation in the context of single nucleotide polymorphisms in the human GSTM cluster.

Authors:  Andrey V Khrunin; Irina N Filippova; Aydar M Aliev; Tat'yana V Tupitsina; Petr A Slominsky; Svetlana A Limborska
Journal:  Mol Cytogenet       Date:  2016-04-19       Impact factor: 2.009

  9 in total

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