Literature DB >> 17324117

dbZach toxicogenomic information management system.

Lyle D Burgoon1, Timothy R Zacharewski.   

Abstract

Quantitative risk assessment and the elucidation of mechanisms of toxicity require innovative computational analysis and infrastructure capable of integrating all levels of biological data organization. Enterprise data management solutions provide the capability to manage and integrate disparate data throughout the source-to-outcome continuum. These capabilities enable software engineers and developers to create and validate software solutions to facilitate the identification of more predictive biomarkers for exposures, molecular responses and toxicity, allowing evaluation of historical assessments and the comparison of data across technologies, species and chemical classes. The toxicogenomic information management system dbZach is a modular relational database with associated data insertion, retrieval and mining tools that manages traditional toxicology and complementary toxicogenomic data to facilitate comprehensive data integration, analysis and sharing. To achieve widescale toxicogenomic data reporting and sharing, a dialog with other toxicogenomic database groups and the toxicogenomics community has emerged to identify needs and requirements, as well as establish the structure of data reporting and exchange standards.

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Mesh:

Year:  2007        PMID: 17324117     DOI: 10.2217/14622416.8.3.287

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  9 in total

1.  Comparisons of differential gene expression elicited by TCDD, PCB126, βNF, or ICZ in mouse hepatoma Hepa1c1c7 cells and C57BL/6 mouse liver.

Authors:  Rance Nault; Agnes L Forgacs; Edward Dere; Timothy R Zacharewski
Journal:  Toxicol Lett       Date:  2013-08-29       Impact factor: 4.372

2.  Comparative analysis of temporal and dose-dependent TCDD-elicited gene expression in human, mouse, and rat primary hepatocytes.

Authors:  Agnes L Forgacs; Edward Dere; Michelle M Angrish; Timothy R Zacharewski
Journal:  Toxicol Sci       Date:  2013-02-15       Impact factor: 4.849

3.  Non-additive hepatic gene expression elicited by 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (PCB153) co-treatment in C57BL/6 mice.

Authors:  Anna K Kopec; Michelle L D'Souza; Bryan D Mets; Lyle D Burgoon; Sarah E Reese; Kellie J Archer; Dave Potter; Colleen Tashiro; Bonnie Sharratt; Jack R Harkema; Timothy R Zacharewski
Journal:  Toxicol Appl Pharmacol       Date:  2011-08-07       Impact factor: 4.219

4.  Automated dose-response analysis and comparative toxicogenomic evaluation of the hepatic effects elicited by TCDD, TCDF, and PCB126 in C57BL/6 mice.

Authors:  Anna K Kopec; Lyle D Burgoon; Daher Ibrahim-Aibo; Ashley R Burg; Andrea W Lee; Colleen Tashiro; Dave Potter; Bonnie Sharratt; Jack R Harkema; J Craig Rowlands; Robert A Budinsky; Timothy R Zacharewski
Journal:  Toxicol Sci       Date:  2010-08-11       Impact factor: 4.849

5.  PCB153-elicited hepatic responses in the immature, ovariectomized C57BL/6 mice: comparative toxicogenomic effects of dioxin and non-dioxin-like ligands.

Authors:  Anna K Kopec; Lyle D Burgoon; Daher Ibrahim-Aibo; Bryan D Mets; Colleen Tashiro; Dave Potter; Bonnie Sharratt; Jack R Harkema; Timothy R Zacharewski
Journal:  Toxicol Appl Pharmacol       Date:  2009-12-18       Impact factor: 4.219

6.  Comparative analysis of AhR-mediated TCDD-elicited gene expression in human liver adult stem cells.

Authors:  Suntae Kim; Edward Dere; Lyle D Burgoon; Chia-Cheng Chang; Timothy R Zacharewski
Journal:  Toxicol Sci       Date:  2009-08-14       Impact factor: 4.849

7.  Loss of Hif-2α Rescues the Hif-1α Deletion Phenotype of Neonatal Respiratory Distress In Mice.

Authors:  Yogesh Saini; Steven P Proper; Peter Dornbos; Krista K Greenwood; Anna K Kopec; Scott G Lynn; Elizabeth Grier; Lyle D Burgoon; Timothy R Zacharewski; Russell S Thomas; Jack R Harkema; John J LaPres
Journal:  PLoS One       Date:  2015-09-30       Impact factor: 3.240

8.  RNA-Seq versus oligonucleotide array assessment of dose-dependent TCDD-elicited hepatic gene expression in mice.

Authors:  Rance Nault; Kelly A Fader; Tim Zacharewski
Journal:  BMC Genomics       Date:  2015-05-10       Impact factor: 3.969

9.  Species-specific regulation of PXR/CAR/ER-target genes in the mouse and rat liver elicited by o, p'-DDT.

Authors:  Naoki Kiyosawa; Joshua C Kwekel; Lyle D Burgoon; Edward Dere; Kurt J Williams; Colleen Tashiro; Brock Chittim; Timothy R Zacharewski
Journal:  BMC Genomics       Date:  2008-10-16       Impact factor: 3.969

  9 in total

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