Literature DB >> 17322321

Gene targeting in gram-negative bacteria by use of a mobile group II intron ("Targetron") expressed from a broad-host-range vector.

Jun Yao1, Alan M Lambowitz.   

Abstract

Mobile group II introns ("targetrons") can be programmed for insertion into virtually any desired DNA target with high frequency and specificity. Here, we show that targetrons expressed via an m-toluic acid-inducible promoter from a broad-host-range vector containing an RK2 minireplicon can be used for efficient gene targeting in a variety of gram-negative bacteria, including Escherichia coli, Pseudomonas aeruginosa, and Agrobacterium tumefaciens. Targetrons expressed from donor plasmids introduced by electroporation or conjugation yielded targeted disruptions at frequencies of 1 to 58% of screened colonies in the E. coli lacZ, P. aeruginosa pqsA and pqsH, and A. tumefaciens aopB and chvI genes. The development of this broad-host-range system for targetron expression should facilitate gene targeting in many bacteria.

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Year:  2007        PMID: 17322321      PMCID: PMC1855620          DOI: 10.1128/AEM.02829-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  44 in total

1.  Targeted and random bacterial gene disruption using a group II intron (targetron) vector containing a retrotransposition-activated selectable marker.

Authors:  Jin Zhong; Michael Karberg; Alan M Lambowitz
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

2.  Characterization of the C-terminal DNA-binding/DNA endonuclease region of a group II intron-encoded protein.

Authors:  Joseph San Filippo; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2002-12-13       Impact factor: 5.469

Review 3.  Conjugative plasmid transfer in gram-positive bacteria.

Authors:  Elisabeth Grohmann; Günther Muth; Manuel Espinosa
Journal:  Microbiol Mol Biol Rev       Date:  2003-06       Impact factor: 11.056

4.  Analysis of Pseudomonas aeruginosa 4-hydroxy-2-alkylquinolines (HAQs) reveals a role for 4-hydroxy-2-heptylquinoline in cell-to-cell communication.

Authors:  Eric Déziel; François Lépine; Sylvain Milot; Jianxin He; Michael N Mindrinos; Ronald G Tompkins; Laurence G Rahme
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-22       Impact factor: 11.205

5.  Genetic manipulation of Lactococcus lactis by using targeted group II introns: generation of stable insertions without selection.

Authors:  Courtney L Frazier; Joseph San Filippo; Alan M Lambowitz; David A Mills
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

6.  Restriction for gene insertion within the Lactococcus lactis Ll.LtrB group II intron.

Authors:  Isabelle Plante; Benoit Cousineau
Journal:  RNA       Date:  2006-09-14       Impact factor: 4.942

Review 7.  Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool.

Authors:  Stanton B Gelvin
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

8.  Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.

Authors:  Larry A Gallagher; Susan L McKnight; Marina S Kuznetsova; Everett C Pesci; Colin Manoil
Journal:  J Bacteriol       Date:  2002-12       Impact factor: 3.490

9.  Use of computer-designed group II introns to disrupt Escherichia coli DExH/D-box protein and DNA helicase genes.

Authors:  Jiri Perutka; Wenjun Wang; David Goerlitz; Alan M Lambowitz
Journal:  J Mol Biol       Date:  2004-02-13       Impact factor: 5.469

10.  Conjugation mediates transfer of the Ll.LtrB group II intron between different bacterial species.

Authors:  Kamila Belhocine; Isabelle Plante; Benoit Cousineau
Journal:  Mol Microbiol       Date:  2004-03       Impact factor: 3.501

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  30 in total

Review 1.  The tertiary structure of group II introns: implications for biological function and evolution.

Authors:  Anna Marie Pyle
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

Review 2.  Group II Intron RNPs and Reverse Transcriptases: From Retroelements to Research Tools.

Authors:  Marlene Belfort; Alan M Lambowitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

3.  The METTL20 Homologue from Agrobacterium tumefaciens Is a Dual Specificity Protein-lysine Methyltransferase That Targets Ribosomal Protein L7/L12 and the β Subunit of Electron Transfer Flavoprotein (ETFβ).

Authors:  Jędrzej Małecki; Helge-André Dahl; Anders Moen; Erna Davydova; Pål Ø Falnes
Journal:  J Biol Chem       Date:  2016-02-29       Impact factor: 5.157

4.  Use of RmInt1, a group IIB intron lacking the intron-encoded protein endonuclease domain, in gene targeting.

Authors:  Fernando M García-Rodríguez; Antonio Barrientos-Durán; Vanessa Díaz-Prado; Manuel Fernández-López; Nicolás Toro
Journal:  Appl Environ Microbiol       Date:  2010-11-29       Impact factor: 4.792

5.  Mechanisms used for genomic proliferation by thermophilic group II introns.

Authors:  Georg Mohr; Eman Ghanem; Alan M Lambowitz
Journal:  PLoS Biol       Date:  2010-06-08       Impact factor: 8.029

6.  Efficient Construction of Large Genomic Deletion in Agrobacterium tumefaciens by Combination of Cre/loxP System and Triple Recombineering.

Authors:  Zhengqiang Liu; Yali Xie; Xu Zhang; Xiaofeng Hu; Yusheng Li; Xuezhi Ding; Liqiu Xia; Shengbiao Hu
Journal:  Curr Microbiol       Date:  2016-01-07       Impact factor: 2.188

7.  Targeted gene disruption in Francisella tularensis by group II introns.

Authors:  Stephen A Rodriguez; Greg Davis; Karl E Klose
Journal:  Methods       Date:  2009-05-04       Impact factor: 3.608

8.  MrdH, a novel metal resistance determinant of Pseudomonas putida KT2440, is flanked by metal-inducible mobile genetic elements.

Authors:  Adhikarla Haritha; Korripally Prem Sagar; Anand Tiwari; Patnala Kiranmayi; Agnes Rodrigue; Pamarthi Maruthi Mohan; Surya Satyanarayana Singh
Journal:  J Bacteriol       Date:  2009-07-31       Impact factor: 3.490

9.  Engineering clostridium strain to accept unmethylated DNA.

Authors:  Hongjun Dong; Yanping Zhang; Zongjie Dai; Yin Li
Journal:  PLoS One       Date:  2010-02-09       Impact factor: 3.240

10.  Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367.

Authors:  Andrew C Tolonen; Amanda C Chilaka; George M Church
Journal:  Mol Microbiol       Date:  2009-09-22       Impact factor: 3.501

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