Literature DB >> 17316047

DFT and NMR studies of 2JCOH, 3JHCOH, and 3JCCOH spin-couplings in saccharides: C-O torsional bias and H-bonding in aqueous solution.

Hongqiu Zhao1, Qingfeng Pan, Wenhui Zhang, Ian Carmichael, Anthony S Serianni.   

Abstract

Density functional theory (DFT) has been used to investigate the structural dependencies of NMR spin-coupling constants (J-couplings) involving the exchangeable hydroxyl protons of saccharides. 3JHCOH, 3JCCOH, and 2JCOH values were calculated at different positions in model aldopyranosyl rings as a function of one or more torsion angles, and results support the use of a generalized Karplus equation to treat 3JHCOH involving the non-anomeric OH groups. The presence of O5 appended to the H1-C1-O1-H coupling pathway introduces asymmetry in 3JH1,O1H Karplus curves due to internal electronegative substituent effects on the gauche couplings, thus requiring separate equations to treat this coupling. 3JCCOH values depend not only on the C-C-O-H torsion angle but also on the orientation of terminal substituents on the coupled carbon, similar to 3JCOCC studied previously (Bose et al., J. Am. Chem. Soc. 1998, 120, 11158-11173). "In-plane" oxygen increased 3JCCOH by approximately 3-4 Hz, whereas "in-plane" carbon gave more modest enhancements ( approximately 1 Hz). Three Karplus equations were derived for non-anomeric 3JCCOH based on the nature and orientation of substituents on the coupled carbon. Like 3JH1,O1H, 3JC2,O1H is also subject to internal electronegative substituent effects on the gauche couplings, thus necessitating separate equations to treat this coupling. 2JCOH values were found not to be useful probes of C-O torsions as a result of their nonsystematic dependence on these torsions. Experimental measurements of 3JHCOH and 3JCCOH in doubly 13C-labeled methyl beta-lactoside 20 and its constituent 13C-labeled methyl aldopyranosides in H2O/acetone-d6 at -20 degrees C showed that some C-O torsion angles are influenced by molecular context and do not experience complete rotational averaging in solution. A strong bias in the H3-C3-O3-H torsion angle in the Glc residue of 20 favoring a gauche conformation suggests the presence of inter-residue H-bonding between O3HGlc and O5Gal. Quantitative analysis of 3JHCOH and 3JCCOH values in 20 indicates that approximately 85% of the forms in solution have geometries consistent with H-bonding. These results suggest that H-bonding between adjacent and/or remote residues may play a role in dictating preferred glycosidic bond conformation in simple and complex oligosaccharides in aqueous solution.

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Year:  2007        PMID: 17316047     DOI: 10.1021/jo0619884

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  13 in total

1.  Probing deoxysugar conformational preference: A comprehensive computational study investigating the effects of deoxygenation.

Authors:  Alison E Vickman; Nicola L B Pohl
Journal:  Carbohydr Res       Date:  2018-12-12       Impact factor: 2.104

Review 2.  Predicting the Structures of Glycans, Glycoproteins, and Their Complexes.

Authors:  Robert J Woods
Journal:  Chem Rev       Date:  2018-08-09       Impact factor: 60.622

Review 3.  Computational NMR of Carbohydrates: Theoretical Background, Applications, and Perspectives.

Authors:  Leonid B Krivdin
Journal:  Molecules       Date:  2021-04-22       Impact factor: 4.411

4.  A non-Karplus effect: evidence from phosphorus heterocycles and DFT calculations of the dependence of vicinal phosphorus-hydrogen NMR coupling constants on lone-pair conformation.

Authors:  William H Hersh; Sherrell T Lam; Daniel J Moskovic; Antonios J Panagiotakis
Journal:  J Org Chem       Date:  2012-05-23       Impact factor: 4.354

5.  Conformational Populations of β-(1→4) O-Glycosidic Linkages Using Redundant NMR J-Couplings and Circular Statistics.

Authors:  Wenhui Zhang; Toby Turney; Reagan Meredith; Qingfeng Pan; Luke Sernau; Xiaocong Wang; Xiaosong Hu; Robert J Woods; Ian Carmichael; Anthony S Serianni
Journal:  J Phys Chem B       Date:  2017-03-30       Impact factor: 2.991

6.  Insights into furanose solution conformations: beyond the two-state model.

Authors:  Xiaocong Wang; Robert J Woods
Journal:  J Biomol NMR       Date:  2016-03-12       Impact factor: 2.835

7.  Conformational properties of methyl β-maltoside and methyl α- and β-cellobioside disaccharides.

Authors:  Elizabeth Hatcher; Elin Säwén; Göran Widmalm; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2010-12-15       Impact factor: 2.991

8.  Glycoside Hydrolases Restrict the Side Chain Conformation of Their Substrates To Gain Additional Transition State Stabilization.

Authors:  Jonathan C K Quirke; David Crich
Journal:  J Am Chem Soc       Date:  2020-09-24       Impact factor: 15.419

Review 9.  Developments in the Karplus equation as they relate to the NMR coupling constants of carbohydrates.

Authors:  Bruce Coxon
Journal:  Adv Carbohydr Chem Biochem       Date:  2009       Impact factor: 12.200

10.  Structural evidence for inter-residue hydrogen bonding observed for cellobiose in aqueous solution.

Authors:  William B O'Dell; David C Baker; Sylvia E McLain
Journal:  PLoS One       Date:  2012-10-02       Impact factor: 3.240

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