Literature DB >> 17312944

Alternative splicing expression of U1 snRNP 70K gene is evolutionary conserved between different plant species.

Smriti Gupta1, Alexandra Ciungu, Natalie Jameson, Shailesh K Lal.   

Abstract

A U1-snRNP--specific 70K (U1-70K) protein is intricately involved in both constitutive and alternative splicing of pre-mRNAs. Here, we report cDNA and cognate genomic sequences of the U1-70K gene of maize and rice. The maize and rice U1-70K genes bear strong similarity to the Arabidopsis gene and each encode three transcripts in roots and shoots. Alternative splicing produces two transcripts from each gene in addition to the mRNA encoding the wild type protein. In both cases, selective inclusion of intron 6 or utilization of a cryptic donor site within intron 6 sequence generates the two alternatively spliced transcripts. This evolutionary conservation of splicing patterns between different plant species suggests an important biological function for alternative splicing in the expression of U1-70K gene.

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Year:  2006        PMID: 17312944     DOI: 10.1080/10425170600856642

Source DB:  PubMed          Journal:  DNA Seq        ISSN: 1026-7913


  2 in total

1.  Heterogeneous Nuclear Ribonucleoprotein H1 Coordinates with Phytochrome and the U1 snRNP Complex to Regulate Alternative Splicing in Physcomitrella patens.

Authors:  Chueh-Ju Shih; Hsiang-Wen Chen; Hsin-Yu Hsieh; Yung-Hua Lai; Fang-Yi Chiu; Yu-Rong Chen; Shih-Long Tu
Journal:  Plant Cell       Date:  2019-08-13       Impact factor: 11.277

2.  Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes.

Authors:  Bing-Bing Wang; Mike O'Toole; Volker Brendel; Nevin D Young
Journal:  BMC Plant Biol       Date:  2008-02-19       Impact factor: 4.215

  2 in total

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