Literature DB >> 17311526

Mechanism of DNA transport through pores.

Murugappan Muthukumar1.   

Abstract

The transport of electrically charged macromolecules such as DNA through narrow pores is a fundamental process in life. When polymer molecules are forced to navigate through pores, their transport is controlled by entropic barriers that accompany their conformational changes. During the past decade, exciting results have emerged from single-molecule electrophysiology experiments. Specifically, the passage of single-stranded DNA/RNA through alpha-hemolysin pores and double-stranded DNA through solid-state nanopores has been investigated. By a combination of these results with the entropic barrier theory of polymer transport and macromolecular simulations, an understanding of the mechanism of DNA transport through pores has emerged.

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Year:  2007        PMID: 17311526     DOI: 10.1146/annurev.biophys.36.040306.132622

Source DB:  PubMed          Journal:  Annu Rev Biophys Biomol Struct        ISSN: 1056-8700


  27 in total

1.  BarMap: RNA folding on dynamic energy landscapes.

Authors:  Ivo L Hofacker; Christoph Flamm; Christian Heine; Michael T Wolfinger; Gerik Scheuermann; Peter F Stadler
Journal:  RNA       Date:  2010-05-26       Impact factor: 4.942

2.  Theory of capture rate in polymer translocation.

Authors:  M Muthukumar
Journal:  J Chem Phys       Date:  2010-05-21       Impact factor: 3.488

3.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

4.  Theoretical study of sequence-dependent nanopore unzipping of DNA.

Authors:  U Bockelmann; V Viasnoff
Journal:  Biophys J       Date:  2008-01-04       Impact factor: 4.033

5.  Scaling theory of polymer translocation into confined regions.

Authors:  Chiu Tai Andrew Wong; Murugappan Muthukumar
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

6.  Origin of translocation barriers for polyelectrolyte chains.

Authors:  Rajeev Kumar; M Muthukumar
Journal:  J Chem Phys       Date:  2009-11-21       Impact factor: 3.488

7.  Nanopore-based identification of individual nucleotides for direct RNA sequencing.

Authors:  Mariam Ayub; Steven W Hardwick; Ben F Luisi; Hagan Bayley
Journal:  Nano Lett       Date:  2013-11-13       Impact factor: 11.189

8.  Pore translocation of knotted DNA rings.

Authors:  Antonio Suma; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-28       Impact factor: 11.205

9.  DNA translocation through short nanofluidic channels under asymmetric pulsed electric field.

Authors:  C Gupta; W-C Liao; D Gallego-Perez; C E Castro; L J Lee
Journal:  Biomicrofluidics       Date:  2014-04-16       Impact factor: 2.800

10.  The entropic cost of polymer confinement.

Authors:  Mark R Smyda; Stephen C Harvey
Journal:  J Phys Chem B       Date:  2012-08-27       Impact factor: 2.991

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