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Literature DB >> 17311386

Folding intermediate in the villin headpiece domain arises from disruption of a N-terminal hydrogen-bonded network.

Jana Khandogin¹, Daniel P Raleigh, Charles L Brooks.

Abstract

Entities: Chemical

Mesh：

Substances：

Year: 2007 PMID： 17311386 PMCID： PMC2546516 DOI： 10.1021/ja0688880

Source DB: PubMed Journal: J Am Chem Soc ISSN： 0002-7863 Impact factor: 15.419

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8 in total

1. NMR structure of an F-actin-binding "headpiece" motif from villin.

Authors: D Vardar; D A Buckley; B S Frank; C J McKnight
Journal: J Mol Biol Date: 1999-12-17 Impact factor: 5.469

2. Constant-pH molecular dynamics using continuous titration coordinates.

Authors: Michael S Lee; Freddie R Salsbury; Charles L Brooks
Journal: Proteins Date: 2004-09-01

3. High-resolution crystal structures of villin headpiece and mutants with reduced F-actin binding activity.

Authors: Jianmin Meng; Didem Vardar; Yeming Wang; Hwai-Chen Guo; James F Head; C James McKnight
Journal: Biochemistry Date: 2005-09-13 Impact factor: 3.162

4. Toward the accurate first-principles prediction of ionization equilibria in proteins.

Authors: Jana Khandogin; Charles L Brooks
Journal: Biochemistry Date: 2006-08-08 Impact factor: 3.162

Review 5. Early events in protein folding explored by rapid mixing methods.

Authors: Heinrich Roder; Kosuke Maki; Hong Cheng
Journal: Chem Rev Date: 2006-05 Impact factor: 60.622

6. Constant pH molecular dynamics with proton tautomerism.

Authors: Jana Khandogin; Charles L Brooks
Journal: Biophys J Date: 2005-04-29 Impact factor: 4.033

7. Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain.

Authors: Michael J Grey; Yuefeng Tang; Emil Alexov; C James McKnight; Daniel P Raleigh; Arthur G Palmer
Journal: J Mol Biol Date: 2005-11-16 Impact factor: 5.469

8. Multistate folding of the villin headpiece domain.

Authors: Yuefeng Tang; Michael J Grey; James McKnight; Arthur G Palmer; Daniel P Raleigh
Journal: J Mol Biol Date: 2005-11-10 Impact factor: 5.469

8 in total

23 in total

1. Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Authors: Alex S Holehouse; Kanchan Garai; Nicholas Lyle; Andreas Vitalis; Rohit V Pappu
Journal: J Am Chem Soc Date: 2015-02-23 Impact factor: 15.419

Folding intermediate in the villin headpiece domain arises from disruption of a N-terminal hydrogen-bonded network.

1. NMR structure of an F-actin-binding "headpiece" motif from villin.

2. Constant-pH molecular dynamics using continuous titration coordinates.

3. High-resolution crystal structures of villin headpiece and mutants with reduced F-actin binding activity.

4. Toward the accurate first-principles prediction of ionization equilibria in proteins.

Review 5. Early events in protein folding explored by rapid mixing methods.

6. Constant pH molecular dynamics with proton tautomerism.

7. Characterizing a partially folded intermediate of the villin headpiece domain under non-denaturing conditions: contribution of His41 to the pH-dependent stability of the N-terminal subdomain.

8. Multistate folding of the villin headpiece domain.

1. Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation.

Review 2. Recent advances in implicit solvent-based methods for biomolecular simulations.

3. Heterogeneity and dynamics in villin headpiece crystal structures.

Review 4. Dielectric relaxation in proteins: the computational perspective.

5. Exploring pH Dependent Host/Guest Binding Affinities.

6. Charge-leveling and proper treatment of long-range electrostatics in all-atom molecular dynamics at constant pH.

Review 7. Generalized Born Implicit Solvent Models for Biomolecules.

8. Towards Accurate Prediction of Protonation Equilibrium of Nucleic Acids.

9. pH-dependent dynamics of complex RNA macromolecules.

Review 10. Lambda-dynamics free energy simulation methods.