Literature DB >> 17307271

Evolutionary history of 7SL RNA-derived SINEs in Supraprimates.

Jan Ole Kriegs1, Gennady Churakov, Jerzy Jurka, Jürgen Brosius, Jürgen Schmitz.   

Abstract

The evolutionary relationships of 7SL RNA-derived SINEs such as the primate Alu or the rodent B1 elements have hitherto been obscure. We established an unambiguous phylogenetic tree for Supraprimates, and derived intraordinal relationships of the 7SL RNA-derived SINEs. As well as new elements in Tupaia and primates, we also found that the purported ancestral fossil Alu monomer was restricted to Primates, and provide here the first description of a potential chimeric promoter box region in SINEs.

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Year:  2007        PMID: 17307271     DOI: 10.1016/j.tig.2007.02.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  99 in total

1.  Accurate identification of A-to-I RNA editing in human by transcriptome sequencing.

Authors:  Jae Hoon Bahn; Jae-Hyung Lee; Gang Li; Christopher Greer; Guangdun Peng; Xinshu Xiao
Journal:  Genome Res       Date:  2011-09-29       Impact factor: 9.043

Review 2.  The role of Alu elements in the cis-regulation of RNA processing.

Authors:  Chammiran Daniel; Mikaela Behm; Marie Öhman
Journal:  Cell Mol Life Sci       Date:  2015-07-30       Impact factor: 9.261

3.  cis-Acting determinants of 7SL RNA packaging by HIV-1.

Authors:  Sarra E Keene; Alice Telesnitsky
Journal:  J Virol       Date:  2012-05-16       Impact factor: 5.103

4.  CG dinucleotide periodicities recognized by the Dnmt3a-Dnmt3L complex are distinctive at retroelements and imprinted domains.

Authors:  Jacob L Glass; Melissa J Fazzari; Anne C Ferguson-Smith; John M Greally
Journal:  Mamm Genome       Date:  2009-11-17       Impact factor: 2.957

5.  Inverse PCR-based method for isolating novel SINEs from genome.

Authors:  Yawei Han; Liping Chen; Lihong Guan; Shunping He
Journal:  Mol Biotechnol       Date:  2014-04       Impact factor: 2.695

6.  Transposable element dysregulation in systemic lupus erythematosus and regulation by histone conformation and Hsp90.

Authors:  Maurer Kelly; Shi Lihua; Zhang Zhe; Song Li; Paucar Yoselin; Petri Michelle; E Sullivan Kathleen
Journal:  Clin Immunol       Date:  2018-08-24       Impact factor: 3.969

7.  Parameters for accurate genome alignment.

Authors:  Martin C Frith; Michiaki Hamada; Paul Horton
Journal:  BMC Bioinformatics       Date:  2010-02-09       Impact factor: 3.169

8.  The origin and evolution of ARGFX homeobox loci in mammalian radiation.

Authors:  Guang Li; Peter W H Holland
Journal:  BMC Evol Biol       Date:  2010-06-17       Impact factor: 3.260

9.  The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.

Authors:  Nurit Gal-Mark; Schraga Schwartz; Oren Ram; Eduardo Eyras; Gil Ast
Journal:  PLoS Genet       Date:  2009-11-13       Impact factor: 5.917

10.  Alu and b1 repeats have been selectively retained in the upstream and intronic regions of genes of specific functional classes.

Authors:  Aristotelis Tsirigos; Isidore Rigoutsos
Journal:  PLoS Comput Biol       Date:  2009-12-18       Impact factor: 4.475

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