Literature DB >> 17303190

Closure operations in phylogenetics.

Stefan Grünewald1, Mike Steel, M Shel Swenson.   

Abstract

Closure operations are a useful device in both the theory and practice of tree reconstruction in biology and other areas of classification. These operations take a collection of trees (rooted or unrooted) that classify overlapping sets of objects at their leaves, and infer further tree-like relationships. In this paper we investigate closure operations on phylogenetic trees; both rooted and unrooted; as well as on X-splits, and in a general abstract setting. We derive a number of new results, particularly concerning the completeness (and incompleteness) and complexity of various types of closure rules.

Mesh:

Year:  2006        PMID: 17303190     DOI: 10.1016/j.mbs.2006.11.005

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  5 in total

1.  Best match graphs.

Authors:  Manuela Geiß; Edgar Chávez; Marcos González Laffitte; Alitzel López Sánchez; Bärbel M R Stadler; Dulce I Valdivia; Marc Hellmuth; Maribel Hernández Rosales; Peter F Stadler
Journal:  J Math Biol       Date:  2019-04-09       Impact factor: 2.259

2.  Phylogenomics with paralogs.

Authors:  Marc Hellmuth; Nicolas Wieseke; Marcus Lechner; Hans-Peter Lenhof; Martin Middendorf; Peter F Stadler
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

3.  Reconstructing gene trees from Fitch's xenology relation.

Authors:  Manuela Geiß; John Anders; Peter F Stadler; Nicolas Wieseke; Marc Hellmuth
Journal:  J Math Biol       Date:  2018-06-27       Impact factor: 2.259

4.  SuperTriplets: a triplet-based supertree approach to phylogenomics.

Authors:  Vincent Ranwez; Alexis Criscuolo; Emmanuel J P Douzery
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

5.  A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set.

Authors:  David Schaller; Marc Hellmuth; Peter F Stadler
Journal:  Algorithms Mol Biol       Date:  2021-12-06       Impact factor: 1.405

  5 in total

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