| Literature DB >> 17298911 |
Johannes Antonie Bogaards1, Hein Putter, Gerrit Jan Weverling, Jan Ter Meulen, Jaap Goudsmit.
Abstract
BACKGROUND: Severe acute respiratory syndrome (SARS) coronavirus-like viruses continue to circulate in animal reservoirs. If new mutants of SARS coronavirus do initiate another epidemic, administration of prophylactic antibodies to risk groups may supplement the stringent isolation procedures that contained the first SARS outbreak.Entities:
Mesh:
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Year: 2006 PMID: 17298911 PMCID: PMC7106269 DOI: 10.1016/j.tmaid.2006.01.007
Source DB: PubMed Journal: Travel Med Infect Dis ISSN: 1477-8939 Impact factor: 6.211
Figure 1Schema of the flow of individuals between epidemiological compartments. Members of the susceptible population (compartment S) may become infected after contact with an infectious person. Infected persons first enter an asymptomatic phase. Because there is no evidence of pre-symptomatic transmission of SARS, we assume that infectivity begins with the onset of clinical symptoms. Hence, the exposed population (compartment E) is composed of non-infectious, asymptomatically infected individuals whereas the infectious population (compartment I) is composed of symptomatically infected individuals, some of which have been diagnosed with SARS and are admitted to hospital (superscript H). As death from SARS takes place on a similar timescale as recovery, we consider a composite endpoint of persons who have either died or recovered from SARS (compartment R).
Overview of model parameters and their baseline values.
| Model parameter | Notation | Baseline value |
|---|---|---|
| Basic model | ||
| Basic reproduction number | 3 | |
| CDF of transition to infectious stage | Gamma ( | |
| CDF of recovery or death | Weibull ( | |
| CDF of hospital admission | Gamma ( | |
| Relative transmission rate in hospital | 0.20 | |
| Secondary infections per person per day | Poisson ( | |
| Infectivity per person per day | 0.129 | |
| Antibody prophylaxis | ||
| Fraction susceptible after immunization | — | |
| Traceable fraction of contacts | — | |
| Duration of contact tracing | — | |
Before implementation of control measures.
Cumulative distribution function in days since infection.
The mean and variance of the distribution are denoted by μ and , respectively.
Cumulative distribution function in days since onset of clinical symptoms.
The shape and scale of the distribution are denoted by α and β, respectively.
Before implementation of control measures.
The symbol denotes the time (in days) since onset of clinical symptoms.
Fitted to the percentage SARS patients with viral shedding in nasopharyngeal aspirate17, 18 and subsequently scaled to R0.
Applies to model with pre- and/or post-exposure antibody prophylaxis.
Figure 2The reproduction number R, the number of secondary cases produced by an index case, in relation to the time from onset of disease to hospital admission and the rate of hospital transmission relative to community-based transmission. (a) and (b) are based on a basic reproduction number R0=3 which corresponds to a mean admission interval of 7.4 days and a relative rate of hospital transmission c=0.20 (see Table 1). The dotted line in (a) refers to the condition for containment . In (b), the dotted line refers to the baseline value of c=0.20. (c) shows how the condition for containment depends on the basic reproduction number, with the dotted line referring to the baseline value R0=3.
Figure 3Critical vaccination coverage for containment of SARS transmission as a function of the basic reproduction number R0 and the time from onset of disease to hospital admission. In (a) and (b), it is assumed that hospital-based transmission is effectively blocked, i.e. c=0. The duration of contact tracing for post-exposure prophylaxis is set at r=1 day in (a) and at r=3 days in (b). In (c), the duration of contact tracing is set at r=1 day, but hospital-based transmission is assumed to continue at 5% of the rate of community-based transmission, i.e. c=0.05.
Figure 4Scatter plots of outbreak size versus duration in 1000 stochastic model runs for simulated outbreaks with n=10 initial cases. In (a), general control measures are chosen such that R=0.87. Supplemental measures may yield R=0.56 (b), R=0.44 (c) or R=0.20 (d), thus restricting both outbreak size and duration. Outbreak size is the cumulative number of persons infected, including the n=10 initial cases. Outbreak duration is the time until the last patient is discharged from hospital. The shaded area demarcates the 95th percentiles of outbreak size and duration.