Literature DB >> 17295375

O-glycoside orientation is an essential aspect of base J recognition by the kinetoplastid DNA-binding protein JBP1.

Rajesh K Grover1, Stephanie J K Pond, Qizhi Cui, Prem Subramaniam, David A Case, David P Millar, Paul Wentworth.   

Abstract

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Year:  2007        PMID： 17295375     DOI： 10.1002/anie.200604635

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  11 in total

1.  Pull-down of 5-hydroxymethylcytosine DNA using JBP1-coated magnetic beads.

Authors:  Adam B Robertson; John Arne Dahl; Rune Ougland; Arne Klungland
Journal:  Nat Protoc       Date:  2012-01-26       Impact factor: 13.491

2.  The domain architecture of the protozoan protein J-DNA-binding protein 1 suggests synergy between base J DNA binding and thymidine hydroxylase activity.

Authors:  Athanassios Adamopoulos; Tatjana Heidebrecht; Jeroen Roosendaal; Wouter G Touw; Isabelle Q Phan; Jos Beijnen; Anastassis Perrakis
Journal:  J Biol Chem       Date:  2019-07-10       Impact factor: 5.157

3.  Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

Authors:  Henri G A M van Luenen; Carol Farris; Sabrina Jan; Paul-Andre Genest; Pankaj Tripathi; Arno Velds; Ron M Kerkhoven; Marja Nieuwland; Andrew Haydock; Gowthaman Ramasamy; Saara Vainio; Tatjana Heidebrecht; Anastassis Perrakis; Ludo Pagie; Bas van Steensel; Peter J Myler; Piet Borst
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

4.  Quantitative mass spectrometry-based analysis of β-D-glucosyl-5-hydroxymethyluracil in genomic DNA of Trypanosoma brucei.

Authors:  Shuo Liu; Debin Ji; Laura Cliffe; Robert Sabatini; Yinsheng Wang
Journal:  J Am Soc Mass Spectrom       Date:  2014-07-31       Impact factor: 3.109

5.  A novel method for the efficient and selective identification of 5-hydroxymethylcytosine in genomic DNA.

Authors:  Adam B Robertson; John A Dahl; Cathrine B Vågbø; Pankaj Tripathi; Hans E Krokan; Arne Klungland
Journal:  Nucleic Acids Res       Date:  2011-02-07       Impact factor: 16.971

6.  The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1.

Authors:  Tatjana Heidebrecht; Evangelos Christodoulou; Michael J Chalmers; Sabrina Jan; Bas Ter Riet; Rajesh K Grover; Robbie P Joosten; Dene Littler; Henri van Luenen; Patrick R Griffin; Paul Wentworth; Piet Borst; Anastassis Perrakis
Journal:  Nucleic Acids Res       Date:  2011-03-16       Impact factor: 16.971

7.  Facile enzymatic synthesis of base J-containing oligodeoxyribonucleotides and an analysis of the impact of base J on DNA replication in cells.

Authors:  Debin Ji; Yinsheng Wang
Journal:  PLoS One       Date:  2014-07-25       Impact factor: 3.240

8.  Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.

Authors:  Paul-Andre Genest; Loren Baugh; Alex Taipale; Wanqi Zhao; Sabrina Jan; Henri G A M van Luenen; Jonas Korlach; Tyson Clark; Khai Luong; Matthew Boitano; Steve Turner; Peter J Myler; Piet Borst
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

9.  JBP1 and JBP2 are two distinct thymidine hydroxylases involved in J biosynthesis in genomic DNA of African trypanosomes.

Authors:  Laura J Cliffe; Rudo Kieft; Timothy Southern; Shanda R Birkeland; Marion Marshall; Kate Sweeney; Robert Sabatini
Journal:  Nucleic Acids Res       Date:  2009-01-09       Impact factor: 16.971

10.  Synthesis and Multiple Incorporations of 2'-O-Methyl-5-hydroxymethylcytidine, 5-Hydroxymethylcytidine and 5-Formylcytidine Monomers into RNA Oligonucleotides.

Authors:  Arun A Tanpure; Shankar Balasubramanian
Journal:  Chembiochem       Date:  2017-10-09       Impact factor: 3.164
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