Literature DB >> 17295124

Triticeae genomics: advances in sequence analysis of large genome cereal crops.

Nils Stein1.   

Abstract

Whole genome sequencing provides direct access to all genes of an organism and represents an essential step towards a systematic understanding of (crop) plant biology. Wheat and barley, two of the most important crop species worldwide, have two- to five-fold larger genomes than human - too large to be completely sequenced at current costs. Nevertheless, significant progress has been made to unlock the gene contents of these species by sequencing expressed sequence tags (EST) for high-density mapping and as a basis for elucidating gene function on a large scale. Several megabases of genomic (BAC) sequences have been obtained providing a first insight into the complexity of these huge cereal genomes. However, to fully exploit the information of the wheat and barley genomes for crop improvement, sequence analysis of a significantly larger portion of the Triticeae genomes is needed. In this review an overview of the current status of Triticeae genome sequencing and a perspective concerning future developments in cereal structural genomics is provided.

Entities:  

Mesh:

Year:  2007        PMID: 17295124     DOI: 10.1007/s10577-006-1107-9

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  80 in total

1.  Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

Authors:  T Wicker; N Stein; L Albar; C Feuillet; E Schlagenhauf; B Keller
Journal:  Plant J       Date:  2001-05       Impact factor: 6.417

2.  Expressed sequence tags: alternative or complement to whole genome sequences?

Authors:  Stephen Rudd
Journal:  Trends Plant Sci       Date:  2003-07       Impact factor: 18.313

3.  Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat.

Authors:  Xiu-Ying Kong; Yong Qiang Gu; Frank M You; Jorge Dubcovsky; Olin D Anderson
Journal:  Plant Mol Biol       Date:  2004-01       Impact factor: 4.076

Review 4.  Updating the 'crop circle'.

Authors:  Katrien M Devos
Journal:  Curr Opin Plant Biol       Date:  2005-04       Impact factor: 7.834

5.  Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries.

Authors:  John Emberton; Jianxin Ma; Yinan Yuan; Phillip SanMiguel; Jeffrey L Bennetzen
Journal:  Genome Res       Date:  2005-10       Impact factor: 9.043

Review 6.  Leafing through the genomes of our major crop plants: strategies for capturing unique information.

Authors:  Andrew H Paterson
Journal:  Nat Rev Genet       Date:  2006-03       Impact factor: 53.242

7.  Positional relationships between photoperiod response QTL and photoreceptor and vernalization genes in barley.

Authors:  P Szucs; I Karsai; J von Zitzewitz; K Mészáros; L L D Cooper; Y Q Gu; T H H Chen; P M Hayes; J S Skinner
Journal:  Theor Appl Genet       Date:  2006-02-17       Impact factor: 5.699

Review 8.  Searching for regulatory elements in human noncoding sequences.

Authors:  L Duret; P Bucher
Journal:  Curr Opin Struct Biol       Date:  1997-06       Impact factor: 6.809

9.  Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice.

Authors:  Katherine S Caldwell; Peter Langridge; Wayne Powell
Journal:  Plant Physiol       Date:  2004-10-01       Impact factor: 8.340

10.  The wheat VRN2 gene is a flowering repressor down-regulated by vernalization.

Authors:  Liuling Yan; Artem Loukoianov; Ann Blechl; Gabriela Tranquilli; Wusirika Ramakrishna; Phillip SanMiguel; Jeffrey L Bennetzen; Viviana Echenique; Jorge Dubcovsky
Journal:  Science       Date:  2004-03-12       Impact factor: 47.728

View more
  16 in total

1.  Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.

Authors:  Parminder Kaur; Steven R Larson; B Shaun Bushman; Richard R-C Wang; Ivan W Mott; David Hole; Jyothi Thimmapuram; George Gong; Lei Liu
Journal:  Funct Integr Genomics       Date:  2008-06-10       Impact factor: 3.410

2.  The international barley sequencing consortium--at the threshold of efficient access to the barley genome.

Authors:  Daniela Schulte; Timothy J Close; Andreas Graner; Peter Langridge; Takashi Matsumoto; Gary Muehlbauer; Kazuhiro Sato; Alan H Schulman; Robbie Waugh; Roger P Wise; Nils Stein
Journal:  Plant Physiol       Date:  2009-01       Impact factor: 8.340

3.  Clustered and dispersed chromosomal distribution of the two classes of Revolver transposon family in rye (Secale cereale).

Authors:  Motonori Tomita; Takaaki Kanzaki; Eri Tanaka
Journal:  J Appl Genet       Date:  2021-03-10       Impact factor: 3.240

4.  The barley Frost resistance-H2 locus.

Authors:  Marianna Pasquariello; Delfina Barabaschi; Axel Himmelbach; Burkhard Steuernagel; Ruvini Ariyadasa; Nils Stein; Francesco Gandolfi; Elena Tenedini; Isabella Bernardis; Enrico Tagliafico; Nicola Pecchioni; Enrico Francia
Journal:  Funct Integr Genomics       Date:  2014-01-18       Impact factor: 3.410

5.  A set of modular binary vectors for transformation of cereals.

Authors:  Axel Himmelbach; Uwe Zierold; Götz Hensel; Jan Riechen; Dimitar Douchkov; Patrick Schweizer; Jochen Kumlehn
Journal:  Plant Physiol       Date:  2007-11-02       Impact factor: 8.340

6.  Revolver and superior: novel transposon-like gene families of the plant kingdom.

Authors:  Motonori Tomita
Journal:  Curr Genomics       Date:  2010-03       Impact factor: 2.236

7.  Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain.

Authors:  James Breen; Dora Li; David S Dunn; Ferenc Békés; Xiuying Kong; Juncheng Zhang; Jizeng Jia; Thomas Wicker; Rohit Mago; Wujun Ma; Matthew Bellgard; Rudi Appels
Journal:  BMC Plant Biol       Date:  2010-05-27       Impact factor: 4.215

8.  Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat.

Authors:  Mathieu Charles; Harry Belcram; Jérémy Just; Cécile Huneau; Agnès Viollet; Arnaud Couloux; Béatrice Segurens; Meredith Carter; Virginie Huteau; Olivier Coriton; Rudi Appels; Sylvie Samain; Boulos Chalhoub
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

9.  Gene content and virtual gene order of barley chromosome 1H.

Authors:  Klaus F X Mayer; Stefan Taudien; Mihaela Martis; Hana Simková; Pavla Suchánková; Heidrun Gundlach; Thomas Wicker; Andreas Petzold; Marius Felder; Burkhard Steuernagel; Uwe Scholz; Andreas Graner; Matthias Platzer; Jaroslav Dolezel; Nils Stein
Journal:  Plant Physiol       Date:  2009-08-19       Impact factor: 8.340

10.  TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1.

Authors:  Sven Gottwald; Petra Bauer; Takao Komatsuda; Udda Lundqvist; Nils Stein
Journal:  BMC Res Notes       Date:  2009-12-17
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.