Literature DB >> 17285562

Is the intrinsic disorder of proteins the cause of the scale-free architecture of protein-protein interaction networks?

Santiago Schnell1, Santo Fortunato, Sourav Roy.   

Abstract

In protein-protein interaction (PPI) networks certain topological properties appear to be recurrent: network maps are considered scale-free. It is possible that this topology is reflected in the protein structure. In this paper, we investigate the role of protein disorder in the network topology. We find that the disorder of a protein (or of its neighbors) is independent of its number of PPIs. This result suggests that protein disorder does not play a role in the scale-free architecture of protein networks.

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Year:  2007        PMID: 17285562     DOI: 10.1002/pmic.200600455

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  11 in total

1.  Compaction properties of an intrinsically disordered protein: Sic1 and its kinase-inhibitor domain.

Authors:  Stefania Brocca; Lorenzo Testa; Frank Sobott; Maria Samalikova; Antonino Natalello; Elena Papaleo; Marina Lotti; Luca De Gioia; Silvia Maria Doglia; Lilia Alberghina; Rita Grandori
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

2.  Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions.

Authors:  Nitin Bhardwaj; Alexej Abyzov; Declan Clarke; Chong Shou; Mark B Gerstein
Journal:  Protein Sci       Date:  2011-09-15       Impact factor: 6.725

3.  Intrinsic disorder and protein multibinding in domain, terminal, and linker regions.

Authors:  Jessica H Fong; Anna R Panchenko
Journal:  Mol Biosyst       Date:  2010-06-11

4.  Intrinsic disorder: signaling via highly specific but short-lived association.

Authors:  Huan-Xiang Zhou
Journal:  Trends Biochem Sci       Date:  2011-12-07       Impact factor: 13.807

5.  The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity.

Authors:  Mauricio Macossay-Castillo; Giulio Marvelli; Mainak Guharoy; Aashish Jain; Daisuke Kihara; Peter Tompa; Shoshana J Wodak
Journal:  J Mol Biol       Date:  2019-03-13       Impact factor: 5.469

Review 6.  Regulation of cell division by intrinsically unstructured proteins: intrinsic flexibility, modularity, and signaling conduits.

Authors:  Charles A Galea; Yuefeng Wang; Sivashankar G Sivakolundu; Richard W Kriwacki
Journal:  Biochemistry       Date:  2008-07-22       Impact factor: 3.162

7.  Regulation of protein-protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes.

Authors:  Hafumi Nishi; Jessica H Fong; Christiana Chang; Sarah A Teichmann; Anna R Panchenko
Journal:  Mol Biosyst       Date:  2013-01-30

8.  Large-scale analysis of thermostable, mammalian proteins provides insights into the intrinsically disordered proteome.

Authors:  Charles A Galea; Anthony A High; John C Obenauer; Ashutosh Mishra; Cheon-Gil Park; Marco Punta; Avner Schlessinger; Jing Ma; Burkhard Rost; Clive A Slaughter; Richard W Kriwacki
Journal:  J Proteome Res       Date:  2009-01       Impact factor: 4.466

9.  Structural disorder promotes assembly of protein complexes.

Authors:  Hedi Hegyi; Eva Schad; Peter Tompa
Journal:  BMC Struct Biol       Date:  2007-10-08

10.  The role of disorder in interaction networks: a structural analysis.

Authors:  Philip M Kim; Andrea Sboner; Yu Xia; Mark Gerstein
Journal:  Mol Syst Biol       Date:  2008-03-25       Impact factor: 11.429

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